Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 C 1.50697 * 109.46938 * 240.00603 * 2 1 3 5 5 H 1.08001 * 119.99981 * 240.07748 * 4 2 1 6 6 C 1.37885 * 120.00295 * 60.08116 * 4 2 1 7 7 N 1.31515 * 119.99681 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47371 * 89.99791 * 8 6 4 10 10 H 1.48506 * 109.47075 * 209.99834 * 8 6 4 11 11 H 1.48497 * 109.47453 * 329.99283 * 8 6 4 12 12 C 1.50690 * 109.47425 * 120.00454 * 2 1 3 13 13 C 1.38602 * 120.80262 * 178.17502 * 12 2 1 14 14 N 1.32339 * 119.10463 * 179.72525 * 13 12 2 15 15 C 1.31787 * 120.81738 * 0.27170 * 14 13 12 16 16 N 1.31795 * 121.75937 * 0.02562 * 15 14 13 17 17 C 1.32335 * 120.81566 * 359.97438 * 16 15 14 18 18 H 1.08996 * 109.46904 * 299.99152 * 1 2 3 19 19 H 1.08995 * 109.47449 * 59.99856 * 1 2 3 20 20 H 1.09005 * 109.46716 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46929 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.47186 * 300.00305 * 3 2 1 23 23 H 1.09003 * 109.46855 * 60.00330 * 3 2 1 24 24 H 0.97003 * 119.99544 * 180.02562 * 7 6 4 25 25 H 1.07999 * 120.44638 * 359.97438 * 13 12 2 26 26 H 1.08002 * 119.12361 * 180.02562 * 15 14 13 27 27 H 1.08003 * 120.44713 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6522 -1.5891 -1.1315 6 6 1.7006 -0.2381 -2.4828 7 7 0.9454 0.8318 -2.6034 8 14 2.3226 -1.1190 -4.0081 9 1 1.3431 -2.1590 -4.4132 10 1 2.4897 -0.1396 -5.1118 11 1 3.6297 -1.7586 -3.7119 12 6 2.0324 -0.7104 1.2303 13 6 3.3908 -0.8795 1.4473 14 7 3.7951 -1.5038 2.5419 15 6 2.9240 -1.9662 3.4161 16 7 1.6251 -1.8290 3.2402 17 6 1.1470 -1.2158 2.1693 18 1 -0.3633 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4426 0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6767 1.9563 0.8901 24 1 0.7117 1.1637 -3.4844 25 1 4.1099 -0.5033 0.7347 26 1 3.2841 -2.4710 4.3004 27 1 0.0814 -1.1071 2.0309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261106438.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = 23.009175 kcal Electronic energy + Delta-G solvation = -11891.993123 eV Core-core repulsion = 9842.150005 eV Total energy + Delta-G solvation = -2049.843118 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.86886 -37.73066 -34.52866 -33.82750 -30.88583 -28.04268 -27.24803 -25.14666 -24.80819 -21.11743 -18.53041 -18.33873 -17.77629 -16.86307 -15.60011 -15.34856 -14.69486 -14.38404 -14.36423 -13.50492 -13.39147 -12.93247 -12.87779 -12.58029 -12.37710 -12.15166 -11.64857 -11.61628 -11.09031 -11.02245 -10.43499 -10.02463 -9.97461 -8.03245 -6.19755 0.19874 0.20404 1.42786 1.46982 1.53937 2.44660 2.98975 3.20592 3.40440 3.41289 3.92885 4.20835 4.25049 4.66261 4.80614 4.93502 5.08442 5.10146 5.18218 5.38897 5.59850 5.62821 5.67983 6.03592 6.08513 6.23870 6.38931 6.83292 7.22184 7.48334 8.95519 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049398 B = 0.012425 C = 0.011330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.687623 B = 2252.966651 C = 2470.692992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.099 3.901 3 C -0.119 4.119 4 C -0.518 4.518 5 H 0.044 0.956 6 C 0.031 3.969 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.275 1.275 12 C -0.143 4.143 13 C 0.138 3.862 14 N -0.535 5.535 15 C 0.255 3.745 16 N -0.532 5.532 17 C 0.124 3.876 18 H 0.035 0.965 19 H 0.066 0.934 20 H 0.031 0.969 21 H 0.030 0.970 22 H 0.068 0.932 23 H 0.023 0.977 24 H 0.262 0.738 25 H 0.164 0.836 26 H 0.224 0.776 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -1.750 5.745 6.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 C -0.177 4.177 4 C -0.556 4.556 5 H 0.063 0.937 6 C -0.169 4.169 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.207 1.207 10 H -0.209 1.209 11 H -0.199 1.199 12 C -0.147 4.147 13 C -0.027 4.027 14 N -0.248 5.248 15 C -0.032 4.032 16 N -0.245 5.245 17 C -0.041 4.041 18 H 0.054 0.946 19 H 0.085 0.915 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.181 0.819 26 H 0.240 0.760 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.426 -2.102 6.428 6.912 hybrid contribution -0.041 0.057 -1.823 1.824 sum 1.385 -2.045 4.605 5.226 Atomic orbital electron populations 1.21784 0.96840 0.99286 1.00728 1.17141 0.93221 0.92032 0.87907 1.21695 0.98553 0.97252 1.00214 1.21194 1.31850 1.11815 0.90782 0.93726 1.25438 0.95095 0.95476 1.00882 1.69904 1.36886 1.23168 1.23776 0.85784 0.78675 0.78466 0.80051 1.20712 1.20875 1.19948 1.22247 0.95633 0.98360 0.98459 1.23150 0.94859 0.91687 0.93014 1.68402 1.41061 1.11402 1.03955 1.25441 0.84831 0.94702 0.98257 1.68409 1.17543 1.16174 1.22388 1.23466 1.01659 0.90833 0.88150 0.94561 0.91515 0.95030 0.95122 0.91284 0.95750 0.92881 0.81901 0.76019 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 6.93 71.98 0.50 -5.07 15 2 C 0.10 4.42 0.59 -53.68 -0.03 4.39 15 3 C -0.12 -5.28 8.09 71.98 0.58 -4.70 15 4 C -0.52 -26.04 7.70 25.60 0.20 -25.84 15 5 H 0.04 2.29 7.57 -2.91 -0.02 2.27 15 6 C 0.03 1.58 5.15 84.66 0.44 2.02 15 7 N -0.90 -46.60 9.35 21.45 0.20 -46.40 15 8 Si 0.94 41.24 29.54 68.60 2.03 43.26 15 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 12 C -0.14 -5.81 4.72 -19.69 -0.09 -5.90 15 13 C 0.14 5.40 10.01 84.70 0.85 6.24 15 14 N -0.53 -19.31 10.44 -200.04 -2.09 -21.40 15 15 C 0.26 8.21 12.28 180.89 2.22 10.43 15 16 N -0.53 -18.58 10.44 -200.04 -2.09 -20.67 15 17 C 0.12 4.59 10.24 84.70 0.87 5.45 15 18 H 0.04 1.36 7.49 -2.39 -0.02 1.35 15 19 H 0.07 3.23 6.08 -2.39 -0.01 3.21 15 20 H 0.03 1.31 7.63 -2.38 -0.02 1.29 15 21 H 0.03 1.29 7.59 -2.39 -0.02 1.27 15 22 H 0.07 3.37 6.06 -2.39 -0.01 3.36 15 23 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 24 H 0.26 13.09 8.31 -92.71 -0.77 12.32 15 25 H 0.16 6.26 7.77 -2.91 -0.02 6.24 15 26 H 0.22 5.10 8.06 -2.91 -0.02 5.07 15 27 H 0.18 5.93 6.07 -2.91 -0.02 5.91 15 Total: -1.00 -53.92 227.58 4.74 -49.18 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.16 Total: 8.99 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.53 Total: -12.97 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -3.98 Total: -88.47 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -53.92 4.74 -49.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106438.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.192 kcal (2) G-P(sol) polarization free energy of solvation -53.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds