Wall clock time and date at job start Mon Mar 30 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47050 * 2 1 4 4 C 1.50701 * 109.46828 * 180.02562 * 3 2 1 5 5 C 1.39078 * 120.66407 * 90.00066 * 4 3 2 6 6 N 1.31897 * 119.26175 * 180.02562 * 5 4 3 7 7 C 1.33458 * 120.68527 * 0.02562 * 6 5 4 8 8 C 1.41592 * 119.27917 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00403 * 359.97438 * 8 7 6 10 10 C 1.40065 * 119.99615 * 179.97438 * 8 7 6 11 11 N 1.30694 * 119.99914 * 359.72707 * 10 8 7 12 12 Si 1.86800 * 120.00256 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47090 * 89.99796 * 12 10 8 14 14 H 1.48495 * 109.47520 * 210.00138 * 12 10 8 15 15 H 1.48507 * 109.46786 * 330.00096 * 12 10 8 16 16 N 1.33449 * 121.43252 * 0.25480 * 7 6 5 17 17 C 1.31899 * 120.68575 * 359.47401 * 16 7 6 18 18 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47084 * 300.00555 * 1 2 3 20 20 H 1.09004 * 109.46844 * 60.00253 * 1 2 3 21 21 H 1.08999 * 109.46788 * 240.00167 * 2 1 3 22 22 H 1.08995 * 109.46720 * 119.99989 * 2 1 3 23 23 H 1.08994 * 109.47190 * 59.99940 * 3 2 1 24 24 H 1.09004 * 109.47091 * 299.99596 * 3 2 1 25 25 H 1.08005 * 120.36789 * 0.02562 * 5 4 3 26 26 H 0.97000 * 119.99570 * 180.02562 * 11 10 8 27 27 H 1.08010 * 120.36720 * 180.23293 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2558 1.4426 -1.1972 6 7 5.5744 1.4420 -1.1655 7 6 6.2277 1.4408 -0.0018 8 6 7.6436 1.4396 -0.0025 9 1 8.1832 1.4393 -0.9380 10 6 8.3444 1.4388 1.2103 11 7 7.6914 1.4446 2.3424 12 14 10.2124 1.4381 1.2095 13 1 10.7080 2.8379 1.2099 14 1 10.7077 0.7374 2.4215 15 1 10.7066 0.7383 -0.0035 16 7 5.5754 1.4350 1.1624 17 6 4.2569 1.4407 1.1953 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.6767 1.9563 0.8899 24 1 1.6767 1.9563 -0.8900 25 1 3.7323 1.4432 -2.1420 26 1 8.1769 1.4444 3.1822 27 1 3.7342 1.4398 2.1405 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111760.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:56 Heat of formation + Delta-G solvation = 3.804819 kcal Electronic energy + Delta-G solvation = -11352.649281 eV Core-core repulsion = 9301.973399 eV Total energy + Delta-G solvation = -2050.675882 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86794 -36.48598 -35.28109 -33.67165 -32.14321 -29.15168 -26.19786 -24.65471 -23.29500 -21.78024 -19.74429 -18.03224 -17.02245 -16.21518 -15.49755 -15.39552 -15.02510 -14.48127 -13.91585 -13.89009 -13.05993 -12.93396 -12.79885 -12.69677 -12.59122 -12.02267 -11.94329 -11.47706 -11.26205 -11.06626 -10.80976 -9.66608 -9.24515 -8.42108 -6.70699 0.72729 1.05798 1.39489 1.50639 1.55922 2.20659 2.75201 3.88429 4.03767 4.08711 4.19834 4.24561 4.38994 4.51813 4.67697 4.89279 4.98639 5.06930 5.15482 5.19924 5.29455 5.34205 5.56361 5.66255 5.87407 6.16229 6.54620 6.64605 7.19086 8.22973 8.38461 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.088914 B = 0.008449 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.834897 B = 3313.163563 C = 3506.890304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.036 4.036 4 C -0.322 4.322 5 C 0.149 3.851 6 N -0.624 5.624 7 C 0.357 3.643 8 C -0.445 4.445 9 H 0.087 0.913 10 C 0.024 3.976 11 N -0.751 5.751 12 Si 1.000 3.000 13 H -0.259 1.259 14 H -0.261 1.261 15 H -0.257 1.257 16 N -0.542 5.542 17 C 0.138 3.862 18 H 0.058 0.942 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.162 0.838 26 H 0.284 0.716 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 -0.995 -0.704 7.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.075 4.075 4 C -0.331 4.331 5 C -0.021 4.021 6 N -0.344 5.344 7 C 0.118 3.882 8 C -0.481 4.481 9 H 0.105 0.895 10 C -0.199 4.199 11 N -0.374 5.374 12 Si 0.819 3.181 13 H -0.184 1.184 14 H -0.185 1.185 15 H -0.181 1.181 16 N -0.259 5.259 17 C -0.034 4.034 18 H 0.077 0.923 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.179 0.821 26 H 0.094 0.906 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.934 -1.002 -0.454 6.035 hybrid contribution -0.215 -0.013 0.090 0.233 sum -6.149 -1.015 -0.365 6.243 Atomic orbital electron populations 1.21740 0.94043 1.01982 1.02351 1.21506 0.96663 0.96341 1.00898 1.20085 0.88275 0.96857 1.02253 1.21266 0.98484 1.18647 0.94694 1.23073 0.89981 0.90962 0.98133 1.68677 1.10378 1.24402 1.30903 1.20373 0.95529 0.89370 0.82897 1.19686 0.88891 1.44596 0.94914 0.89518 1.27064 1.06691 0.92298 0.93855 1.70208 1.39581 1.28572 0.98994 0.84953 0.74071 0.79712 0.79373 1.18376 1.18529 1.18079 1.69316 1.08125 1.19385 1.29118 1.23326 0.91087 0.91168 0.97827 0.92310 0.92197 0.91934 0.93256 0.93700 0.91440 0.90955 0.82137 0.90551 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.91 71.98 0.71 -2.25 15 2 C -0.12 -3.21 5.92 30.59 0.18 -3.03 15 3 C -0.04 -1.11 5.39 29.85 0.16 -0.94 15 4 C -0.32 -13.65 5.19 -19.46 -0.10 -13.75 15 5 C 0.15 6.84 11.01 84.88 0.93 7.78 15 6 N -0.62 -34.57 10.36 -193.90 -2.01 -36.58 15 7 C 0.36 21.34 7.37 135.15 1.00 22.33 15 8 C -0.45 -25.90 9.38 23.54 0.22 -25.68 15 9 H 0.09 4.88 7.85 -2.91 -0.02 4.86 15 10 C 0.02 1.25 5.50 85.31 0.47 1.72 15 11 N -0.75 -41.08 11.43 21.84 0.25 -40.83 15 12 Si 1.00 38.90 29.56 68.60 2.03 40.92 15 13 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 14 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 16 N -0.54 -31.38 7.88 -193.90 -1.53 -32.90 15 17 C 0.14 6.71 11.01 84.88 0.93 7.64 15 18 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 19 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.07 1.91 8.10 -2.39 -0.02 1.89 15 24 H 0.07 1.97 8.10 -2.39 -0.02 1.95 15 25 H 0.16 6.02 8.06 -2.91 -0.02 5.99 15 26 H 0.28 13.80 8.29 -92.71 -0.77 13.03 15 27 H 0.15 6.22 8.06 -2.91 -0.02 6.20 15 Total: -1.00 -66.75 240.38 4.40 -62.35 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.15 Total: 13.23 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.51 Total: -6.19 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.29 Total: -110.32 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Total: -66.75 4.40 -62.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111760.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.155 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds