Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38878 * 120.33483 * 2 1 4 4 C 1.38310 * 118.50971 * 179.75480 * 3 2 1 5 5 C 1.39228 * 119.08729 * 0.53106 * 4 3 2 6 6 N 1.38839 * 119.71046 * 179.73306 * 5 4 3 7 7 C 1.46501 * 119.99549 * 184.72893 * 6 5 4 8 8 C 1.36909 * 120.00269 * 4.72595 * 6 5 4 9 9 H 1.08005 * 119.99695 * 338.47141 * 8 6 5 10 10 C 1.38807 * 120.00076 * 158.19484 * 8 6 5 11 11 N 1.31566 * 120.00161 * 350.39340 * 10 8 6 12 12 Si 1.86805 * 120.00186 * 170.39601 * 10 8 6 13 13 H 1.48498 * 109.46917 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47205 * 119.99770 * 12 10 8 15 15 H 1.48498 * 109.46863 * 240.00362 * 12 10 8 16 16 N 1.32500 * 120.57475 * 359.45783 * 5 4 3 17 17 C 1.31883 * 121.62236 * 0.27289 * 16 5 4 18 18 H 1.09007 * 109.47397 * 269.97675 * 1 2 3 19 19 H 1.09003 * 109.47231 * 29.97587 * 1 2 3 20 20 H 1.09002 * 109.47864 * 149.97459 * 1 2 3 21 21 H 1.08000 * 120.74681 * 0.04867 * 3 2 1 22 22 H 1.08001 * 120.45847 * 180.26447 * 4 3 2 23 23 H 1.09004 * 109.46707 * 265.92844 * 7 6 5 24 24 H 1.08992 * 109.47444 * 25.93256 * 7 6 5 25 25 H 1.09002 * 109.46891 * 145.93319 * 7 6 5 26 26 H 0.97007 * 120.00210 * 180.02562 * 11 10 8 27 27 H 1.08000 * 119.56928 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1986 0.0000 4 6 3.5907 1.1546 0.0052 5 6 4.2285 -0.0830 -0.0010 6 7 5.6156 -0.1423 -0.0016 7 6 6.2934 -1.4363 -0.1127 8 6 6.3501 1.0085 0.1017 9 1 5.9066 1.9576 -0.1612 10 6 7.6628 0.9563 0.5498 11 7 8.1423 -0.1610 1.0527 12 14 8.7487 2.4722 0.4390 13 1 7.9776 3.5906 -0.1608 14 1 9.2023 2.8568 1.7997 15 1 9.9295 2.1741 -0.4107 16 7 3.5232 -1.2047 -0.0010 17 6 2.2044 -1.1923 -0.0005 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3635 -0.8897 -0.5142 21 1 1.6861 2.1440 0.0008 22 1 4.1676 2.0677 0.0097 23 1 6.5227 -1.8131 0.8841 24 1 5.6437 -2.1437 -0.6280 25 1 7.2181 -1.3148 -0.6768 26 1 9.0596 -0.1974 1.3662 27 1 1.6627 -2.1266 -0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114650.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = 45.291369 kcal Electronic energy + Delta-G solvation = -11591.130711 eV Core-core repulsion = 9542.253822 eV Total energy + Delta-G solvation = -2048.876890 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08468 -36.01388 -32.61338 -31.38664 -30.28951 -26.57037 -26.12194 -23.32869 -21.97557 -20.35130 -17.54455 -16.34913 -15.21792 -14.66740 -13.95409 -13.72582 -13.52169 -12.90467 -12.86463 -12.05019 -11.88791 -11.72681 -11.40282 -11.17925 -10.82235 -10.72607 -10.40931 -10.23918 -9.36489 -8.74187 -8.56842 -8.22247 -6.76002 -6.37538 -3.83473 2.40707 2.50864 3.12010 3.15267 3.19609 3.98029 4.73447 4.83152 5.19873 5.59691 5.69808 5.80211 6.05003 6.14342 6.28596 6.45116 6.57482 6.79120 6.88035 7.03261 7.14363 7.30013 7.37750 7.44422 7.69035 8.01829 8.50644 9.05463 9.24881 9.74851 10.57489 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064472 B = 0.010253 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.193036 B = 2730.134100 C = 3106.199568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.280 4.280 3 C -0.033 4.033 4 C -0.252 4.252 5 C 0.364 3.636 6 N -0.424 5.424 7 C 0.131 3.869 8 C -0.308 4.308 9 H 0.099 0.901 10 C 0.029 3.971 11 N -0.871 5.871 12 Si 0.932 3.068 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.279 1.279 16 N -0.570 5.570 17 C 0.158 3.842 18 H 0.047 0.953 19 H 0.048 0.952 20 H 0.050 0.950 21 H 0.109 0.891 22 H 0.122 0.878 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.270 0.730 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 1.353 -1.748 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.288 4.288 3 C -0.058 4.058 4 C -0.279 4.279 5 C 0.123 3.877 6 N -0.113 5.113 7 C -0.012 4.012 8 C -0.437 4.437 9 H 0.117 0.883 10 C -0.176 4.176 11 N -0.507 5.507 12 Si 0.758 3.242 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.205 1.205 16 N -0.291 5.291 17 C -0.005 4.005 18 H 0.066 0.934 19 H 0.067 0.933 20 H 0.069 0.931 21 H 0.127 0.873 22 H 0.140 0.860 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.239 0.493 -1.664 5.519 hybrid contribution 0.231 1.471 0.090 1.491 sum -5.009 1.964 -1.574 5.605 Atomic orbital electron populations 1.20302 0.92359 1.00786 1.00240 1.19999 0.95690 0.94315 1.18825 1.20868 0.93354 0.96682 0.94929 1.21150 0.94234 0.97696 1.14794 1.18465 0.85622 0.88946 0.94628 1.42515 0.99686 1.07173 1.61912 1.21341 0.95052 0.83592 1.01235 1.19714 0.94506 0.87015 1.42456 0.88300 1.25413 0.98089 0.98608 0.95498 1.70137 1.16449 1.26224 1.37842 0.85777 0.79631 0.80679 0.78131 1.19146 1.20521 1.20452 1.67128 1.07876 1.29878 1.24187 1.21906 0.89088 0.96177 0.93308 0.93421 0.93301 0.93111 0.87275 0.86045 0.92763 0.94326 0.92152 0.92012 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.03 36.00 0.36 -0.77 15 2 C -0.28 -5.24 5.90 -104.43 -0.62 -5.85 15 3 C -0.03 -0.65 9.85 -39.32 -0.39 -1.04 15 4 C -0.25 -5.74 9.32 -39.19 -0.37 -6.11 15 5 C 0.36 9.17 7.33 -155.06 -1.14 8.04 15 6 N -0.42 -11.27 3.12 -122.43 -0.38 -11.66 15 7 C 0.13 3.32 8.70 59.85 0.52 3.84 15 8 C -0.31 -8.18 9.14 -15.07 -0.14 -8.32 15 9 H 0.10 2.52 5.96 -52.48 -0.31 2.20 15 10 C 0.03 0.75 5.16 -17.45 -0.09 0.66 15 11 N -0.87 -23.31 10.46 55.49 0.58 -22.73 15 12 Si 0.93 19.84 29.56 -169.99 -5.03 14.81 15 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 16 N -0.57 -13.61 9.09 -12.43 -0.11 -13.72 15 17 C 0.16 3.19 10.85 -17.57 -0.19 3.00 15 18 H 0.05 0.63 8.14 -51.92 -0.42 0.21 15 19 H 0.05 0.63 8.09 -51.93 -0.42 0.21 15 20 H 0.05 0.64 8.09 -51.93 -0.42 0.22 15 21 H 0.11 1.81 8.06 -52.49 -0.42 1.38 15 22 H 0.12 2.72 6.08 -52.49 -0.32 2.40 15 23 H 0.05 1.44 7.45 -51.93 -0.39 1.05 15 24 H 0.04 0.91 7.32 -51.93 -0.38 0.53 15 25 H 0.06 1.54 7.09 -51.93 -0.37 1.17 15 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 27 H 0.13 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 232.49 15.07 3.50 3.50 Total: -1.00 -28.40 232.49 -6.49 -34.89 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.01 Total: 1.45 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.04 Total: -6.55 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.09 Total: -48.10 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.40 -6.49 -34.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114650.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.179 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds