Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38878 * 120.33483 * 2 1 4 4 C 1.38310 * 118.50971 * 179.75480 * 3 2 1 5 5 C 1.39228 * 119.08729 * 0.53106 * 4 3 2 6 6 N 1.38839 * 119.71046 * 179.73306 * 5 4 3 7 7 C 1.46501 * 119.99549 * 184.72893 * 6 5 4 8 8 C 1.36909 * 120.00269 * 4.72595 * 6 5 4 9 9 H 1.08005 * 119.99695 * 338.47141 * 8 6 5 10 10 C 1.38807 * 120.00076 * 158.19484 * 8 6 5 11 11 N 1.31566 * 120.00161 * 350.39340 * 10 8 6 12 12 Si 1.86805 * 120.00186 * 170.39601 * 10 8 6 13 13 H 1.48498 * 109.46917 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47205 * 119.99770 * 12 10 8 15 15 H 1.48498 * 109.46863 * 240.00362 * 12 10 8 16 16 N 1.32500 * 120.57475 * 359.45783 * 5 4 3 17 17 C 1.31883 * 121.62236 * 0.27289 * 16 5 4 18 18 H 1.09007 * 109.47397 * 269.97675 * 1 2 3 19 19 H 1.09003 * 109.47231 * 29.97587 * 1 2 3 20 20 H 1.09002 * 109.47864 * 149.97459 * 1 2 3 21 21 H 1.08000 * 120.74681 * 0.04867 * 3 2 1 22 22 H 1.08001 * 120.45847 * 180.26447 * 4 3 2 23 23 H 1.09004 * 109.46707 * 265.92844 * 7 6 5 24 24 H 1.08992 * 109.47444 * 25.93256 * 7 6 5 25 25 H 1.09002 * 109.46891 * 145.93319 * 7 6 5 26 26 H 0.97007 * 120.00210 * 180.02562 * 11 10 8 27 27 H 1.08000 * 119.56928 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1986 0.0000 4 6 3.5907 1.1546 0.0052 5 6 4.2285 -0.0830 -0.0010 6 7 5.6156 -0.1423 -0.0016 7 6 6.2934 -1.4363 -0.1127 8 6 6.3501 1.0085 0.1017 9 1 5.9066 1.9576 -0.1612 10 6 7.6628 0.9563 0.5498 11 7 8.1423 -0.1610 1.0527 12 14 8.7487 2.4722 0.4390 13 1 7.9776 3.5906 -0.1608 14 1 9.2023 2.8568 1.7997 15 1 9.9295 2.1741 -0.4107 16 7 3.5232 -1.2047 -0.0010 17 6 2.2044 -1.1923 -0.0005 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3635 -0.8897 -0.5142 21 1 1.6861 2.1440 0.0008 22 1 4.1676 2.0677 0.0097 23 1 6.5227 -1.8131 0.8841 24 1 5.6437 -2.1437 -0.6280 25 1 7.2181 -1.3148 -0.6768 26 1 9.0596 -0.1974 1.3662 27 1 1.6627 -2.1266 -0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114650.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = 29.205609 kcal Electronic energy + Delta-G solvation = -11591.828242 eV Core-core repulsion = 9542.253822 eV Total energy + Delta-G solvation = -2049.574421 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.82400 -37.81895 -34.33618 -33.15694 -31.94299 -28.48276 -27.71498 -25.08707 -23.66687 -22.07165 -19.37022 -18.21675 -16.95447 -16.42377 -15.58243 -15.52220 -15.24556 -14.61398 -14.35289 -13.66154 -13.45803 -13.16650 -13.02586 -12.90892 -12.62044 -12.45549 -12.11759 -11.95096 -11.23551 -10.41831 -10.39643 -9.95570 -8.57912 -8.24868 -5.80957 0.71985 0.83930 1.41549 1.45710 1.55966 2.23116 2.90251 3.02679 3.39935 3.97522 4.25671 4.51324 4.56521 4.59793 4.86495 4.98620 4.99805 5.06788 5.21508 5.30588 5.36897 5.37926 5.50939 5.78896 5.92398 6.27900 6.63035 7.24104 7.37570 7.91368 8.70335 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064472 B = 0.010253 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.193036 B = 2730.134100 C = 3106.199568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.257 4.257 3 C -0.031 4.031 4 C -0.272 4.272 5 C 0.342 3.658 6 N -0.459 5.459 7 C 0.155 3.845 8 C -0.330 4.330 9 H 0.100 0.900 10 C -0.019 4.019 11 N -0.908 5.908 12 Si 1.002 2.998 13 H -0.258 1.258 14 H -0.278 1.278 15 H -0.275 1.275 16 N -0.594 5.594 17 C 0.140 3.860 18 H 0.064 0.936 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.147 0.853 22 H 0.117 0.883 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.270 0.730 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 2.350 -2.035 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.264 4.264 3 C -0.056 4.056 4 C -0.299 4.299 5 C 0.104 3.896 6 N -0.153 5.153 7 C 0.011 3.989 8 C -0.458 4.458 9 H 0.118 0.882 10 C -0.220 4.220 11 N -0.546 5.546 12 Si 0.825 3.175 13 H -0.182 1.182 14 H -0.204 1.204 15 H -0.201 1.201 16 N -0.315 5.315 17 C -0.021 4.021 18 H 0.083 0.917 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.165 0.835 22 H 0.135 0.865 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.805 1.485 -1.959 8.183 hybrid contribution 0.624 1.105 0.169 1.280 sum -7.181 2.590 -1.790 7.841 Atomic orbital electron populations 1.20408 0.88385 1.02871 1.01944 1.20639 0.98480 0.93222 1.14063 1.21349 0.92141 0.98933 0.93173 1.21315 0.95902 0.96777 1.15954 1.18885 0.85575 0.90259 0.94862 1.42591 1.00385 1.07005 1.65275 1.20983 0.94538 0.83945 0.99470 1.19970 0.95306 0.87333 1.43217 0.88208 1.26318 0.99083 1.01571 0.94980 1.70256 1.16754 1.28178 1.39419 0.84736 0.77609 0.77230 0.77972 1.18152 1.20394 1.20079 1.67136 1.09792 1.29940 1.24626 1.22635 0.88138 0.98577 0.92743 0.91723 0.91362 0.91070 0.83509 0.86508 0.95227 0.93730 0.93515 0.92032 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.03 71.23 0.71 -1.08 15 2 C -0.26 -8.58 5.90 -19.74 -0.12 -8.69 15 3 C -0.03 -1.11 9.85 22.44 0.22 -0.89 15 4 C -0.27 -12.27 9.32 22.52 0.21 -12.06 15 5 C 0.34 17.43 7.33 133.11 0.98 18.40 15 6 N -0.46 -25.27 3.12 -541.25 -1.69 -26.96 15 7 C 0.15 8.20 8.70 127.77 1.11 9.31 15 8 C -0.33 -18.08 9.14 84.04 0.77 -17.31 15 9 H 0.10 5.22 5.96 -2.91 -0.02 5.21 15 10 C -0.02 -1.00 5.16 84.87 0.44 -0.56 15 11 N -0.91 -50.58 10.46 21.65 0.23 -50.35 15 12 Si 1.00 41.45 29.56 68.60 2.03 43.48 15 13 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 14 H -0.28 -11.33 7.11 99.48 0.71 -10.63 15 15 H -0.28 -11.11 7.11 99.48 0.71 -10.40 15 16 N -0.59 -28.08 9.09 -193.23 -1.76 -29.84 15 17 C 0.14 5.27 10.85 84.66 0.92 6.19 15 18 H 0.06 1.35 8.14 -2.38 -0.02 1.33 15 19 H 0.07 1.36 8.09 -2.39 -0.02 1.34 15 20 H 0.07 1.39 8.09 -2.39 -0.02 1.37 15 21 H 0.15 4.17 8.06 -2.91 -0.02 4.14 15 22 H 0.12 5.27 6.08 -2.91 -0.02 5.25 15 23 H 0.03 1.65 7.45 -2.38 -0.02 1.64 15 24 H 0.04 2.21 7.32 -2.39 -0.02 2.19 15 25 H 0.05 2.52 7.09 -2.39 -0.02 2.50 15 26 H 0.27 14.08 8.31 -92.70 -0.77 13.31 15 27 H 0.17 4.97 8.06 -2.91 -0.02 4.94 15 Total: -1.00 -62.79 232.49 5.21 -57.58 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.16 Total: 12.78 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.24 Total: -6.68 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.22 Total: -107.16 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -62.79 5.21 -57.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114650.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.790 kcal (2) G-P(sol) polarization free energy of solvation -62.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds