Wall clock time and date at job start Mon Mar 30 2020 01:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34951 * 126.03900 * 124.71786 * 10 9 7 12 12 C 1.35323 * 107.74633 * 179.83813 * 11 10 9 13 13 C 1.50696 * 126.03855 * 180.15772 * 12 11 10 14 14 C 1.52998 * 117.49858 * 188.90262 * 13 12 11 15 15 C 1.53004 * 60.00150 * 252.51520 * 14 13 12 16 16 C 1.39878 * 107.91842 * 0.41991 * 12 11 10 17 17 N 1.30833 * 108.20376 * 359.73875 * 16 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.07995 * 126.12414 * 359.97438 * 11 10 9 22 22 H 1.08999 * 115.55485 * 334.61538 * 13 12 11 23 23 H 1.09000 * 117.49856 * 0.02562 * 14 13 12 24 24 H 1.08996 * 117.50064 * 145.02331 * 14 13 12 25 25 H 1.09001 * 117.49246 * 252.51264 * 15 14 13 26 26 H 1.08997 * 117.51881 * 107.48504 * 15 14 13 27 27 H 1.07992 * 125.89577 * 179.76164 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2463 -4.6240 0.8822 12 6 3.2628 -5.4438 0.5275 13 6 3.6750 -6.7052 1.2415 14 6 4.9785 -7.3734 0.7996 15 6 3.6336 -8.0122 0.4471 16 6 3.8672 -4.9101 -0.6156 17 7 3.2327 -3.8126 -0.9388 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 1.5865 -4.7566 1.7268 22 1 3.4191 -6.7514 2.3000 23 1 5.5382 -6.9003 -0.0073 24 1 5.5805 -7.8591 1.5675 25 1 3.3510 -8.9183 0.9832 26 1 3.3080 -7.9598 -0.5918 27 1 4.7115 -5.3316 -1.1407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261125323.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:19 Heat of formation + Delta-G solvation = 91.568846 kcal Electronic energy + Delta-G solvation = -11233.003274 eV Core-core repulsion = 9186.133126 eV Total energy + Delta-G solvation = -2046.870148 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41356 -36.71480 -33.56043 -31.38010 -29.38629 -26.96712 -23.33515 -22.39702 -22.07922 -20.03083 -18.98183 -16.53115 -16.18997 -15.17150 -14.51600 -14.08322 -13.73272 -13.27522 -12.32984 -12.18698 -11.83653 -11.54410 -11.32716 -11.00165 -10.85610 -10.46798 -10.30608 -10.09367 -9.80466 -9.57085 -8.68103 -8.46548 -7.45688 -6.24879 -4.29838 2.77857 3.24270 3.29876 3.34226 3.35723 3.65427 4.30505 4.31922 4.94388 5.10989 5.18431 5.32227 5.53692 5.68137 5.77352 5.81107 6.10311 6.17698 6.31858 6.50467 6.74459 6.92568 7.05747 7.42616 7.70166 7.87583 8.04259 8.62941 8.80131 9.35935 10.84130 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.082633 B = 0.007704 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.765230 B = 3633.786429 C = 3780.655509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.255 3.745 10 N -0.327 5.327 11 C 0.053 3.947 12 C -0.237 4.237 13 C -0.058 4.058 14 C -0.181 4.181 15 C -0.182 4.182 16 C 0.020 3.980 17 N -0.283 5.283 18 H 0.267 0.733 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.163 0.837 22 H 0.102 0.898 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -10.894 2.608 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.138 3.862 10 N -0.107 5.107 11 C -0.097 4.097 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.218 4.218 15 C -0.220 4.220 16 C -0.164 4.164 17 N -0.106 5.106 18 H 0.077 0.923 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.180 0.820 22 H 0.120 0.880 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.600 -9.626 1.768 10.814 hybrid contribution 0.388 0.232 0.615 0.763 sum 4.988 -9.394 2.382 10.900 Atomic orbital electron populations 1.69923 1.06066 1.27638 1.49768 1.24953 0.94995 0.99590 0.94554 0.86309 0.79649 0.82031 0.78414 1.20294 1.20972 1.19684 1.21258 0.93997 0.89374 1.52082 0.91304 1.19722 0.85851 0.81469 0.99176 1.49410 1.23719 1.19193 1.18347 1.22182 1.00116 0.90544 0.96849 1.19092 1.03031 1.00744 1.02102 1.20073 1.00344 0.89807 0.97549 1.22912 0.90788 1.04449 1.03663 1.22990 1.01114 0.96485 1.01389 1.23481 1.00901 0.94691 0.97376 1.77376 1.01133 1.17435 1.14638 0.92320 0.92807 0.93723 0.81966 0.87997 0.88900 0.89242 0.89358 0.89007 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.29 55.43 0.74 -24.84 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.53 -14.93 9.24 -34.44 -0.32 -15.25 15 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 15 9 C 0.26 6.59 6.26 -5.20 -0.03 6.56 15 10 N -0.33 -7.65 3.67 -62.55 -0.23 -7.88 15 11 C 0.05 1.04 11.36 -17.22 -0.20 0.84 15 12 C -0.24 -4.23 5.76 -105.05 -0.61 -4.83 15 13 C -0.06 -0.81 6.25 -91.77 -0.57 -1.38 15 14 C -0.18 -2.15 10.02 -26.73 -0.27 -2.42 15 15 C -0.18 -2.19 10.23 -26.73 -0.27 -2.46 15 16 C 0.02 0.38 11.35 -17.36 -0.20 0.19 15 17 N -0.28 -6.61 12.41 30.62 0.38 -6.24 15 18 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 19 H 0.05 1.36 8.07 -51.93 -0.42 0.94 15 20 H 0.04 1.22 8.14 -51.93 -0.42 0.79 15 21 H 0.16 2.64 8.06 -52.49 -0.42 2.21 15 22 H 0.10 1.29 8.14 -51.93 -0.42 0.86 15 23 H 0.09 1.10 6.97 -51.93 -0.36 0.74 15 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.17 2.60 7.19 -52.49 -0.38 2.23 15 LS Contribution 243.29 15.07 3.67 3.67 Total: -1.00 -29.99 243.29 -6.27 -36.26 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.24 Total: -0.39 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.56 Total: -17.13 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.89 Total: -38.95 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.99 -6.27 -36.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125323.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.828 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds