Wall clock time and date at job start Mon Mar 30 2020 01:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34951 * 126.03900 * 124.71786 * 10 9 7 12 12 C 1.35323 * 107.74633 * 179.83813 * 11 10 9 13 13 C 1.50696 * 126.03855 * 180.15772 * 12 11 10 14 14 C 1.52998 * 117.49858 * 188.90262 * 13 12 11 15 15 C 1.53004 * 60.00150 * 252.51520 * 14 13 12 16 16 C 1.39878 * 107.91842 * 0.41991 * 12 11 10 17 17 N 1.30833 * 108.20376 * 359.73875 * 16 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.07995 * 126.12414 * 359.97438 * 11 10 9 22 22 H 1.08999 * 115.55485 * 334.61538 * 13 12 11 23 23 H 1.09000 * 117.49856 * 0.02562 * 14 13 12 24 24 H 1.08996 * 117.50064 * 145.02331 * 14 13 12 25 25 H 1.09001 * 117.49246 * 252.51264 * 15 14 13 26 26 H 1.08997 * 117.51881 * 107.48504 * 15 14 13 27 27 H 1.07992 * 125.89577 * 179.76164 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2463 -4.6240 0.8822 12 6 3.2628 -5.4438 0.5275 13 6 3.6750 -6.7052 1.2415 14 6 4.9785 -7.3734 0.7996 15 6 3.6336 -8.0122 0.4471 16 6 3.8672 -4.9101 -0.6156 17 7 3.2327 -3.8126 -0.9388 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 1.5865 -4.7566 1.7268 22 1 3.4191 -6.7514 2.3000 23 1 5.5382 -6.9003 -0.0073 24 1 5.5805 -7.8591 1.5675 25 1 3.3510 -8.9183 0.9832 26 1 3.3080 -7.9598 -0.5918 27 1 4.7115 -5.3316 -1.1407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261125323.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:19 Heat of formation + Delta-G solvation = 73.722673 kcal Electronic energy + Delta-G solvation = -11233.777142 eV Core-core repulsion = 9186.133126 eV Total energy + Delta-G solvation = -2047.644016 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.97652 -37.80852 -35.57965 -33.23672 -30.93807 -28.85650 -25.27721 -23.62970 -23.06382 -21.65822 -20.44287 -18.63636 -17.72275 -16.58053 -16.14802 -15.78644 -15.06739 -14.85591 -14.21942 -13.83280 -13.45936 -13.09304 -12.82539 -12.63962 -12.31969 -12.21152 -11.85434 -11.49480 -11.28228 -11.05044 -10.75706 -10.22074 -8.97059 -8.35988 -6.50754 1.19647 1.36271 1.37855 1.49098 1.92733 1.95879 2.33627 2.95429 3.27213 3.78184 4.09895 4.18160 4.34152 4.36825 4.55448 4.63933 4.90251 4.92877 5.10161 5.14514 5.26203 5.42411 5.48712 5.54292 5.78032 5.94504 6.30475 6.62214 7.05190 7.19684 8.71870 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.082633 B = 0.007704 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.765230 B = 3633.786429 C = 3780.655509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.270 3.730 10 N -0.356 5.356 11 C 0.039 3.961 12 C -0.223 4.223 13 C -0.082 4.082 14 C -0.169 4.169 15 C -0.171 4.171 16 C 0.026 3.974 17 N -0.337 5.337 18 H 0.273 0.727 19 H 0.053 0.947 20 H 0.017 0.983 21 H 0.189 0.811 22 H 0.117 0.883 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 -11.930 3.397 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.069 0.931 9 C 0.151 3.849 10 N -0.136 5.136 11 C -0.109 4.109 12 C -0.235 4.235 13 C -0.101 4.101 14 C -0.206 4.206 15 C -0.208 4.208 16 C -0.158 4.158 17 N -0.160 5.160 18 H 0.082 0.918 19 H 0.071 0.929 20 H 0.035 0.965 21 H 0.206 0.794 22 H 0.135 0.865 23 H 0.110 0.890 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.101 0.899 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.800 -10.692 2.565 12.431 hybrid contribution 0.060 0.415 0.366 0.557 sum 5.860 -10.277 2.932 12.188 Atomic orbital electron populations 1.70001 1.07274 1.28843 1.49864 1.25782 0.95889 1.02862 0.93759 0.85312 0.78378 0.77924 0.78594 1.19825 1.19447 1.19626 1.21406 0.93324 0.91060 1.52984 0.93072 1.19257 0.86007 0.81972 0.97685 1.49144 1.24412 1.19988 1.20098 1.22803 1.01182 0.89814 0.97062 1.19527 1.01384 1.01461 1.01125 1.20177 1.02880 0.88798 0.98238 1.23037 0.90413 1.03277 1.03905 1.23039 1.00983 0.96050 1.00769 1.24097 1.00786 0.93353 0.97606 1.77293 1.02469 1.19939 1.16259 0.91768 0.92888 0.96471 0.79395 0.86471 0.89007 0.86959 0.87056 0.89918 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.17 13.29 21.45 0.28 -52.88 15 2 C 0.02 0.98 5.46 84.66 0.46 1.44 15 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 7 C -0.55 -31.90 9.24 25.60 0.24 -31.66 15 8 H 0.05 3.09 7.81 -2.91 -0.02 3.06 15 9 C 0.27 14.48 6.26 85.64 0.54 15.02 15 10 N -0.36 -17.04 3.67 -351.81 -1.29 -18.33 15 11 C 0.04 1.52 11.36 83.54 0.95 2.47 15 12 C -0.22 -7.61 5.76 -20.14 -0.12 -7.73 15 13 C -0.08 -2.03 6.25 -11.54 -0.07 -2.10 15 14 C -0.17 -3.38 10.02 30.60 0.31 -3.07 15 15 C -0.17 -3.51 10.23 30.60 0.31 -3.20 15 16 C 0.03 0.98 11.35 85.24 0.97 1.94 15 17 N -0.34 -16.01 12.41 -57.02 -0.71 -16.72 15 18 H 0.27 14.68 8.31 -92.70 -0.77 13.91 15 19 H 0.05 2.78 8.07 -2.38 -0.02 2.76 15 20 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.19 5.96 8.06 -2.91 -0.02 5.93 15 22 H 0.12 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.09 1.86 6.97 -2.39 -0.02 1.84 15 24 H 0.11 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 27 H 0.20 5.80 7.19 -2.91 -0.02 5.78 15 Total: -1.00 -65.17 243.29 5.05 -60.13 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.15 Total: 8.33 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 3.58 Total: -26.89 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.71 Total: -87.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.17 5.05 -60.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125323.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.850 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds