Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00261 * 2 1 4 4 H 1.48500 * 109.47294 * 270.00661 * 3 2 1 5 5 H 1.48504 * 109.46928 * 30.00252 * 3 2 1 6 6 H 1.48497 * 109.47397 * 150.00008 * 3 2 1 7 7 C 1.37883 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99742 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52378 * 60.11122 * 9 7 2 11 11 C 1.53145 * 109.56685 * 180.26415 * 9 7 2 12 12 C 1.53230 * 109.57348 * 189.36873 * 11 9 7 13 13 N 1.46588 * 108.80570 * 309.46962 * 12 11 9 14 14 N 1.39655 * 127.54673 * 197.28509 * 13 12 11 15 15 C 1.31034 * 108.12510 * 179.97438 * 14 13 12 16 16 C 1.40051 * 108.25392 * 0.02562 * 15 14 13 17 17 C 1.34749 * 107.80282 * 0.02562 * 16 15 14 18 18 C 1.50867 * 127.76876 * 179.97438 * 17 16 15 19 19 H 0.96993 * 119.99635 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.45237 * 309.40406 * 11 9 7 21 21 H 1.09002 * 109.45570 * 69.35814 * 11 9 7 22 22 H 1.09004 * 109.59240 * 189.66897 * 12 11 9 23 23 H 1.08995 * 109.57319 * 69.26185 * 12 11 9 24 24 H 1.07999 * 125.86857 * 180.02562 * 15 14 13 25 25 H 1.08004 * 126.10054 * 179.97438 * 16 15 14 26 26 H 1.09005 * 109.71888 * 315.53920 * 18 17 16 27 27 H 1.08996 * 109.72136 * 76.19769 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6253 -2.5584 -0.8910 11 6 2.2443 -3.6648 0.0055 12 6 1.4938 -4.9799 -0.2295 13 7 0.3650 -5.0530 0.7029 14 7 -0.3677 -6.1853 1.0651 15 6 -1.2885 -5.8181 1.9221 16 6 -1.1687 -4.4383 2.1302 17 6 -0.1484 -3.9940 1.3704 18 6 0.3680 -2.5815 1.2511 19 1 -0.4849 0.8400 0.0004 20 1 2.9792 -3.5197 -0.7864 21 1 2.7521 -3.7042 0.9692 22 1 2.1659 -5.8204 -0.0560 23 1 1.1237 -5.0111 -1.2543 24 1 -2.0148 -6.4677 2.3877 25 1 -1.7849 -3.8373 2.7827 26 1 -0.4696 -1.8903 1.1576 27 1 0.9570 -2.3295 2.1330 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = 60.690898 kcal Electronic energy + Delta-G solvation = -11848.515320 eV Core-core repulsion = 9800.306203 eV Total energy + Delta-G solvation = -2048.209116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69676 -35.96741 -32.88874 -31.09297 -29.57644 -27.36169 -25.03761 -23.00946 -20.90756 -20.23207 -17.97531 -16.40893 -15.79995 -14.92820 -14.52315 -13.78068 -13.11075 -13.03090 -12.80070 -12.62436 -11.71739 -11.50529 -11.11811 -10.97566 -10.65177 -10.51461 -10.13793 -9.85169 -9.36695 -9.02817 -8.58085 -8.41446 -7.78316 -6.12557 -4.19470 2.62941 3.20946 3.24569 3.32210 3.34583 3.49713 4.33931 5.16033 5.19327 5.49632 5.60879 5.75442 5.76961 6.09228 6.35084 6.37117 6.47344 6.63608 6.75830 6.81638 7.20002 7.31923 7.52147 7.60672 7.81801 7.92232 8.23565 8.42707 8.83692 9.46768 10.94773 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066199 B = 0.010846 C = 0.009682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.867571 B = 2581.060139 C = 2891.217056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.032 0.968 11 C -0.127 4.127 12 C 0.134 3.866 13 N -0.369 5.369 14 N -0.324 5.324 15 C 0.036 3.964 16 C -0.301 4.301 17 C 0.117 3.883 18 C -0.054 4.054 19 H 0.263 0.737 20 H 0.079 0.921 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.173 0.827 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 -5.372 1.905 5.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.026 3.974 10 H 0.050 0.950 11 C -0.166 4.166 12 C 0.013 3.987 13 N -0.152 5.152 14 N -0.145 5.145 15 C -0.150 4.150 16 C -0.330 4.330 17 C -0.011 4.011 18 C -0.093 4.093 19 H 0.073 0.927 20 H 0.097 0.903 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.190 0.810 25 H 0.157 0.843 26 H 0.130 0.870 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.069 -6.251 1.149 6.446 hybrid contribution -0.043 1.510 0.471 1.583 sum 1.027 -4.741 1.620 5.114 Atomic orbital electron populations 1.69873 1.05942 1.26880 1.49940 1.24996 0.94887 0.99284 0.94685 0.86549 0.79841 0.83205 0.78159 1.20644 1.21137 1.19855 1.21084 0.92973 0.90035 1.51638 0.92251 1.18773 0.92492 0.92095 0.94020 0.95014 1.22091 0.99304 0.93076 1.02102 1.21878 0.85243 1.00298 0.91312 1.48715 1.26514 1.04817 1.35198 1.77073 1.09314 1.08944 1.19184 1.23726 0.98134 0.95496 0.97594 1.21008 1.05672 0.95149 1.11209 1.22053 0.94019 0.92747 0.92327 1.20816 1.02007 0.86199 1.00315 0.92691 0.90288 0.92155 0.90600 0.90825 0.81001 0.84302 0.87036 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.23 11.49 55.43 0.64 -23.59 15 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 7 C -0.52 -13.38 8.53 -34.44 -0.29 -13.67 15 8 H 0.06 1.50 7.75 -52.49 -0.41 1.09 15 9 C 0.04 1.06 2.12 -91.49 -0.19 0.86 15 10 H 0.03 0.83 8.12 -51.93 -0.42 0.40 15 11 C -0.13 -2.47 5.18 -26.54 -0.14 -2.61 15 12 C 0.13 2.42 7.28 -3.88 -0.03 2.40 15 13 N -0.37 -7.67 4.04 -56.96 -0.23 -7.90 15 14 N -0.32 -6.57 12.62 30.70 0.39 -6.18 15 15 C 0.04 0.65 12.03 -17.21 -0.21 0.44 15 16 C -0.30 -5.87 10.76 -40.14 -0.43 -6.31 15 17 C 0.12 2.51 6.59 -82.22 -0.54 1.96 15 18 C -0.05 -1.25 5.16 -27.59 -0.14 -1.39 15 19 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 20 H 0.08 1.42 8.12 -51.93 -0.42 0.99 15 21 H 0.06 1.16 8.12 -51.93 -0.42 0.74 15 22 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 24 H 0.17 2.37 8.06 -52.49 -0.42 1.95 15 25 H 0.14 2.41 8.06 -52.48 -0.42 1.99 15 26 H 0.11 2.81 6.51 -51.93 -0.34 2.47 15 27 H 0.07 1.58 8.10 -51.93 -0.42 1.16 15 LS Contribution 229.39 15.07 3.46 3.46 Total: -1.00 -28.37 229.39 -6.10 -34.46 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.26 Total: 1.20 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.07 Total: -16.74 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.79 Total: -37.67 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.37 -6.10 -34.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.154 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds