Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00261 * 2 1 4 4 H 1.48500 * 109.47294 * 270.00661 * 3 2 1 5 5 H 1.48504 * 109.46928 * 30.00252 * 3 2 1 6 6 H 1.48497 * 109.47397 * 150.00008 * 3 2 1 7 7 C 1.37883 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99742 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52378 * 60.11122 * 9 7 2 11 11 C 1.53145 * 109.56685 * 180.26415 * 9 7 2 12 12 C 1.53230 * 109.57348 * 189.36873 * 11 9 7 13 13 N 1.46588 * 108.80570 * 309.46962 * 12 11 9 14 14 N 1.39655 * 127.54673 * 197.28509 * 13 12 11 15 15 C 1.31034 * 108.12510 * 179.97438 * 14 13 12 16 16 C 1.40051 * 108.25392 * 0.02562 * 15 14 13 17 17 C 1.34749 * 107.80282 * 0.02562 * 16 15 14 18 18 C 1.50867 * 127.76876 * 179.97438 * 17 16 15 19 19 H 0.96993 * 119.99635 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.45237 * 309.40406 * 11 9 7 21 21 H 1.09002 * 109.45570 * 69.35814 * 11 9 7 22 22 H 1.09004 * 109.59240 * 189.66897 * 12 11 9 23 23 H 1.08995 * 109.57319 * 69.26185 * 12 11 9 24 24 H 1.07999 * 125.86857 * 180.02562 * 15 14 13 25 25 H 1.08004 * 126.10054 * 179.97438 * 16 15 14 26 26 H 1.09005 * 109.71888 * 315.53920 * 18 17 16 27 27 H 1.08996 * 109.72136 * 76.19769 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6253 -2.5584 -0.8910 11 6 2.2443 -3.6648 0.0055 12 6 1.4938 -4.9799 -0.2295 13 7 0.3650 -5.0530 0.7029 14 7 -0.3677 -6.1853 1.0651 15 6 -1.2885 -5.8181 1.9221 16 6 -1.1687 -4.4383 2.1302 17 6 -0.1484 -3.9940 1.3704 18 6 0.3680 -2.5815 1.2511 19 1 -0.4849 0.8400 0.0004 20 1 2.9792 -3.5197 -0.7864 21 1 2.7521 -3.7042 0.9692 22 1 2.1659 -5.8204 -0.0560 23 1 1.1237 -5.0111 -1.2543 24 1 -2.0148 -6.4677 2.3877 25 1 -1.7849 -3.8373 2.7827 26 1 -0.4696 -1.8903 1.1576 27 1 0.9570 -2.3295 2.1330 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = 44.013832 kcal Electronic energy + Delta-G solvation = -11849.238491 eV Core-core repulsion = 9800.306203 eV Total energy + Delta-G solvation = -2048.932288 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.24207 -37.66491 -34.69899 -32.81894 -31.21669 -28.98663 -26.93000 -24.64490 -22.55430 -21.80786 -19.60728 -18.38624 -17.38315 -16.59551 -16.27949 -15.27271 -14.81641 -14.76683 -14.44341 -14.22166 -13.31119 -13.25509 -12.87561 -12.65628 -12.45851 -12.32597 -11.75607 -11.57260 -11.12310 -10.93371 -10.53596 -10.00804 -9.35664 -8.12292 -6.25989 1.05704 1.44581 1.46553 1.55785 1.72907 2.00149 2.43839 3.16761 3.70277 3.98302 4.09918 4.26532 4.32225 4.55389 4.74079 4.80623 4.89296 5.00730 5.07419 5.11702 5.48739 5.59116 5.74614 5.89283 5.92909 6.21403 6.28318 6.84310 6.90379 7.43570 8.94091 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066199 B = 0.010846 C = 0.009682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.867571 B = 2581.060139 C = 2891.217056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.041 3.959 10 H -0.002 1.002 11 C -0.117 4.117 12 C 0.132 3.868 13 N -0.380 5.380 14 N -0.338 5.338 15 C 0.046 3.954 16 C -0.303 4.303 17 C 0.088 3.912 18 C -0.041 4.041 19 H 0.263 0.737 20 H 0.094 0.906 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.217 0.783 25 H 0.155 0.845 26 H 0.083 0.917 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -6.194 2.317 6.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.023 3.977 10 H 0.016 0.984 11 C -0.155 4.155 12 C 0.012 3.988 13 N -0.163 5.163 14 N -0.160 5.160 15 C -0.139 4.139 16 C -0.332 4.332 17 C -0.040 4.040 18 C -0.080 4.080 19 H 0.072 0.928 20 H 0.113 0.887 21 H 0.080 0.920 22 H 0.123 0.877 23 H 0.097 0.903 24 H 0.234 0.766 25 H 0.173 0.827 26 H 0.101 0.899 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.533 -7.082 1.556 7.411 hybrid contribution -0.230 1.731 0.352 1.781 sum 1.303 -5.351 1.908 5.829 Atomic orbital electron populations 1.70011 1.07270 1.27473 1.50849 1.25758 0.95619 1.02510 0.94490 0.85572 0.78777 0.79275 0.78121 1.20345 1.21140 1.19052 1.21460 0.93334 0.91215 1.51196 0.91943 1.18717 0.92956 0.93274 0.92777 0.98358 1.21937 0.98579 0.92186 1.02790 1.21992 0.85156 1.00356 0.91289 1.48937 1.27171 1.04654 1.35558 1.77055 1.10001 1.08911 1.19986 1.24408 0.97873 0.95318 0.96347 1.21361 1.04930 0.96241 1.10631 1.21935 0.95614 0.92251 0.94217 1.20445 1.00740 0.87130 0.99682 0.92826 0.88746 0.91996 0.87734 0.90291 0.76608 0.82687 0.89867 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.10 11.49 21.45 0.25 -50.85 15 2 C 0.02 0.82 5.30 84.66 0.45 1.27 15 3 Si 0.96 41.72 29.54 68.60 2.03 43.75 15 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 5 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 7 C -0.53 -27.70 8.53 25.60 0.22 -27.49 15 8 H 0.06 3.12 7.75 -2.91 -0.02 3.10 15 9 C 0.04 1.99 2.12 -11.36 -0.02 1.96 15 10 H 0.00 -0.09 8.12 -2.39 -0.02 -0.11 15 11 C -0.12 -4.43 5.18 30.72 0.16 -4.27 15 12 C 0.13 4.59 7.28 86.44 0.63 5.22 15 13 N -0.38 -15.27 4.04 -334.13 -1.35 -16.62 15 14 N -0.34 -12.94 12.62 -56.80 -0.72 -13.66 15 15 C 0.05 1.52 12.03 85.25 1.03 2.55 15 16 C -0.30 -11.32 10.76 21.91 0.24 -11.09 15 17 C 0.09 3.74 6.59 41.28 0.27 4.01 15 18 C -0.04 -1.92 5.16 30.04 0.16 -1.76 15 19 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 20 H 0.09 3.25 8.12 -2.39 -0.02 3.23 15 21 H 0.06 2.32 8.12 -2.39 -0.02 2.30 15 22 H 0.10 3.03 8.14 -2.38 -0.02 3.01 15 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.22 5.01 8.06 -2.91 -0.02 4.99 15 25 H 0.16 5.14 8.06 -2.91 -0.02 5.12 15 26 H 0.08 4.36 6.51 -2.38 -0.02 4.34 15 27 H 0.06 2.88 8.10 -2.39 -0.02 2.86 15 Total: -1.00 -60.14 229.39 4.48 -55.66 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.15 Total: 11.31 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.12 Total: -29.59 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.82 Total: -81.13 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -60.14 4.48 -55.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.673 kcal (2) G-P(sol) polarization free energy of solvation -60.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds