Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34855 * 126.03220 * 2 1 4 4 H 0.97008 * 124.72614 * 0.05495 * 3 2 1 5 5 C 1.36952 * 110.55019 * 180.02562 * 3 2 1 6 6 C 1.34432 * 108.99107 * 359.97438 * 5 3 2 7 7 C 1.39275 * 126.03601 * 180.02562 * 2 1 3 8 8 C 1.41346 * 127.14060 * 0.02562 * 7 2 1 9 9 H 1.08004 * 120.00075 * 339.83096 * 8 7 2 10 10 C 1.39675 * 120.00096 * 159.82915 * 8 7 2 11 11 N 1.31050 * 119.99989 * 345.12973 * 10 8 7 12 12 Si 1.86805 * 119.99892 * 165.12313 * 10 8 7 13 13 H 1.48501 * 109.47211 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46750 * 120.00000 * 12 10 8 15 15 H 1.48494 * 109.47293 * 240.00343 * 12 10 8 16 16 C 1.50937 * 109.19702 * 180.02562 * 6 5 3 17 17 N 1.48153 * 105.45634 * 17.21447 * 16 6 5 18 18 C 1.48099 * 103.25804 * 333.14168 * 17 16 6 19 19 H 1.09002 * 109.47058 * 95.17735 * 1 2 3 20 20 H 1.08997 * 109.47311 * 215.17847 * 1 2 3 21 21 H 1.09000 * 109.47317 * 335.18456 * 1 2 3 22 22 H 0.97003 * 119.99751 * 176.55782 * 11 10 8 23 23 H 1.09001 * 110.25216 * 258.21572 * 16 6 5 24 24 H 1.09006 * 110.24657 * 136.20350 * 16 6 5 25 25 H 1.00898 * 111.00181 * 214.14153 * 17 16 6 26 26 H 1.09004 * 110.22503 * 145.96324 * 18 17 16 27 27 H 1.09001 * 110.22218 * 267.81602 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3003 1.0906 0.0000 4 1 1.9806 2.0064 0.0008 5 6 3.6201 0.7250 -0.0006 6 6 3.7024 -0.6168 -0.0004 7 6 2.3263 -1.1262 -0.0005 8 6 1.9173 -2.4792 -0.0016 9 1 0.9204 -2.7422 0.3203 10 6 2.8021 -3.4760 -0.4191 11 7 3.8890 -3.1540 -1.0767 12 14 2.4363 -5.2683 -0.0399 13 1 1.1566 -5.3650 0.7073 14 1 2.3263 -6.0303 -1.3098 15 1 3.5348 -5.8342 0.7835 16 6 5.1555 -1.0250 -0.0004 17 7 5.9045 0.1815 0.4220 18 6 5.0235 1.2939 -0.0019 19 1 -0.3633 -0.0927 -1.0235 20 1 -0.3634 -0.8399 0.5920 21 1 -0.3634 0.9328 0.4313 22 1 4.5282 -3.8408 -1.3230 23 1 5.4623 -1.3282 -1.0014 24 1 5.3191 -1.8376 0.7075 25 1 6.7993 0.2323 -0.0413 26 1 5.0953 2.1214 0.7040 27 1 5.2947 1.6288 -1.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152063.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = 58.526392 kcal Electronic energy + Delta-G solvation = -11919.651611 eV Core-core repulsion = 9871.348635 eV Total energy + Delta-G solvation = -2048.302976 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.68377 -35.79954 -33.27198 -29.98426 -29.11813 -26.78361 -26.17659 -23.73578 -20.60879 -19.00460 -17.71396 -16.47255 -15.27495 -14.66106 -14.64706 -13.50972 -12.95092 -12.76419 -12.52228 -11.85145 -11.61551 -11.24442 -11.15279 -11.09034 -10.84402 -10.67179 -10.24960 -9.80124 -9.33885 -8.89422 -8.10831 -6.96436 -6.38172 -6.29981 -3.83891 3.14296 3.27941 3.33177 3.63141 4.23110 4.34214 4.38118 5.18799 5.61610 5.78328 6.04210 6.14900 6.21628 6.33174 6.56676 6.62541 6.83440 6.90066 7.27121 7.45121 7.50273 7.68897 7.79527 8.05005 8.25633 8.56032 8.93158 9.07207 9.34952 9.37122 10.68490 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.016564 C = 0.011587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.770105 B = 1690.054982 C = 2416.001935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.144 4.144 3 N -0.545 5.545 4 H 0.383 0.617 5 C -0.073 4.073 6 C -0.162 4.162 7 C 0.081 3.919 8 C -0.451 4.451 9 H 0.068 0.932 10 C 0.077 3.923 11 N -0.820 5.820 12 Si 0.897 3.103 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.278 1.278 16 C 0.139 3.861 17 N -0.670 5.670 18 C 0.138 3.862 19 H 0.042 0.958 20 H 0.061 0.939 21 H 0.032 0.968 22 H 0.268 0.732 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.329 0.671 26 H 0.062 0.938 27 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 4.363 0.340 4.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.250 4.250 3 N -0.143 5.143 4 H 0.215 0.785 5 C -0.185 4.185 6 C -0.173 4.173 7 C 0.074 3.926 8 C -0.485 4.485 9 H 0.086 0.914 10 C -0.136 4.136 11 N -0.450 5.450 12 Si 0.723 3.277 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.203 1.203 16 C 0.011 3.989 17 N -0.298 5.298 18 C 0.007 3.993 19 H 0.061 0.939 20 H 0.080 0.920 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.143 0.857 26 H 0.080 0.920 27 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.608 4.326 0.935 4.468 hybrid contribution -0.105 -0.450 -0.897 1.009 sum 0.504 3.876 0.038 3.909 Atomic orbital electron populations 1.19678 0.90073 0.99768 1.00035 1.20053 0.91368 0.85440 1.28142 1.39950 1.02975 1.06486 1.64854 0.78521 1.20410 0.85502 0.96674 1.15865 1.20908 0.93670 0.91598 1.11160 1.17564 0.87414 0.91242 0.96396 1.18675 0.99599 0.90030 1.40148 0.91386 1.25569 0.94855 1.00103 0.93059 1.69948 1.10050 1.34509 1.30466 0.86463 0.79176 0.83573 0.78493 1.19020 1.20701 1.20333 1.20505 0.89921 0.90021 0.98432 1.63853 1.04461 1.03543 1.57894 1.20524 0.87402 0.94034 0.97304 0.93942 0.92032 0.94854 0.92201 0.93041 0.91775 0.85715 0.91978 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.77 10.22 36.01 0.37 -0.40 15 2 C -0.14 -3.54 7.29 -80.88 -0.59 -4.13 15 3 N -0.54 -12.19 5.91 -4.49 -0.03 -12.21 15 4 H 0.38 7.01 8.96 -40.82 -0.37 6.65 15 5 C -0.07 -1.72 8.15 -81.29 -0.66 -2.39 15 6 C -0.16 -4.34 6.19 -102.42 -0.63 -4.97 15 7 C 0.08 2.27 5.91 -104.90 -0.62 1.65 15 8 C -0.45 -12.73 9.11 -37.86 -0.34 -13.08 15 9 H 0.07 1.86 7.56 -52.48 -0.40 1.46 15 10 C 0.08 2.06 5.39 -17.35 -0.09 1.97 15 11 N -0.82 -22.34 9.90 55.53 0.55 -21.79 15 12 Si 0.90 20.20 29.59 -169.99 -5.03 15.17 15 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 16 C 0.14 3.34 5.75 -4.17 -0.02 3.32 15 17 N -0.67 -13.41 7.77 -113.91 -0.88 -14.30 15 18 C 0.14 2.70 7.47 -3.95 -0.03 2.67 15 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.06 1.24 7.78 -51.93 -0.40 0.84 15 21 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.27 6.74 8.30 -40.82 -0.34 6.40 15 23 H 0.05 1.26 7.49 -51.93 -0.39 0.87 15 24 H 0.06 1.63 8.11 -51.93 -0.42 1.21 15 25 H 0.33 5.46 8.92 -39.29 -0.35 5.11 15 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 LS Contribution 229.65 15.07 3.46 3.46 Total: -1.00 -30.51 229.65 -7.71 -38.22 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.15 Total: 6.81 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.63 Total: -15.36 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.36 Total: -48.30 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.51 -7.71 -38.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152063.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.749 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds