Wall clock time and date at job start Mon Mar 30 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34855 * 126.03220 * 2 1 4 4 H 0.97008 * 124.72614 * 0.05495 * 3 2 1 5 5 C 1.36952 * 110.55019 * 180.02562 * 3 2 1 6 6 C 1.34432 * 108.99107 * 359.97438 * 5 3 2 7 7 C 1.39275 * 126.03601 * 180.02562 * 2 1 3 8 8 C 1.41346 * 127.14060 * 0.02562 * 7 2 1 9 9 H 1.08004 * 120.00075 * 339.83096 * 8 7 2 10 10 C 1.39675 * 120.00096 * 159.82915 * 8 7 2 11 11 N 1.31050 * 119.99989 * 345.12973 * 10 8 7 12 12 Si 1.86805 * 119.99892 * 165.12313 * 10 8 7 13 13 H 1.48501 * 109.47211 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46750 * 120.00000 * 12 10 8 15 15 H 1.48494 * 109.47293 * 240.00343 * 12 10 8 16 16 C 1.50937 * 109.19702 * 180.02562 * 6 5 3 17 17 N 1.48153 * 105.45634 * 17.21447 * 16 6 5 18 18 C 1.48099 * 103.25804 * 333.14168 * 17 16 6 19 19 H 1.09002 * 109.47058 * 95.17735 * 1 2 3 20 20 H 1.08997 * 109.47311 * 215.17847 * 1 2 3 21 21 H 1.09000 * 109.47317 * 335.18456 * 1 2 3 22 22 H 0.97003 * 119.99751 * 176.55782 * 11 10 8 23 23 H 1.09001 * 110.25216 * 258.21572 * 16 6 5 24 24 H 1.09006 * 110.24657 * 136.20350 * 16 6 5 25 25 H 1.00898 * 111.00181 * 214.14153 * 17 16 6 26 26 H 1.09004 * 110.22503 * 145.96324 * 18 17 16 27 27 H 1.09001 * 110.22218 * 267.81602 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3003 1.0906 0.0000 4 1 1.9806 2.0064 0.0008 5 6 3.6201 0.7250 -0.0006 6 6 3.7024 -0.6168 -0.0004 7 6 2.3263 -1.1262 -0.0005 8 6 1.9173 -2.4792 -0.0016 9 1 0.9204 -2.7422 0.3203 10 6 2.8021 -3.4760 -0.4191 11 7 3.8890 -3.1540 -1.0767 12 14 2.4363 -5.2683 -0.0399 13 1 1.1566 -5.3650 0.7073 14 1 2.3263 -6.0303 -1.3098 15 1 3.5348 -5.8342 0.7835 16 6 5.1555 -1.0250 -0.0004 17 7 5.9045 0.1815 0.4220 18 6 5.0235 1.2939 -0.0019 19 1 -0.3633 -0.0927 -1.0235 20 1 -0.3634 -0.8399 0.5920 21 1 -0.3634 0.9328 0.4313 22 1 4.5282 -3.8408 -1.3230 23 1 5.4623 -1.3282 -1.0014 24 1 5.3191 -1.8376 0.7075 25 1 6.7993 0.2323 -0.0413 26 1 5.0953 2.1214 0.7040 27 1 5.2947 1.6288 -1.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152063.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:19 Heat of formation + Delta-G solvation = 36.211708 kcal Electronic energy + Delta-G solvation = -11920.619248 eV Core-core repulsion = 9871.348635 eV Total energy + Delta-G solvation = -2049.270614 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.51449 -37.53181 -35.25060 -31.79031 -30.95748 -28.55556 -27.97151 -25.65010 -22.35489 -20.94175 -19.57600 -18.31765 -17.16397 -16.52847 -16.36795 -15.21091 -14.69058 -14.46952 -14.35763 -13.64761 -13.36216 -13.05406 -12.92127 -12.82742 -12.56831 -12.46840 -12.07914 -11.66755 -11.28686 -10.86192 -9.76590 -8.93916 -8.30734 -8.19118 -5.87710 1.34709 1.43087 1.56028 1.78276 2.34596 2.38865 2.63881 3.53933 3.59136 4.19125 4.37397 4.57721 4.69797 4.71632 4.87071 4.95581 5.00956 5.23923 5.40481 5.46217 5.66109 5.79018 5.95621 6.28397 6.52936 6.63515 6.94592 7.20935 7.33918 7.51681 8.72106 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.016564 C = 0.011587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.770105 B = 1690.054982 C = 2416.001935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.143 4.143 3 N -0.531 5.531 4 H 0.406 0.594 5 C -0.070 4.070 6 C -0.217 4.217 7 C 0.020 3.980 8 C -0.486 4.486 9 H 0.061 0.939 10 C 0.031 3.969 11 N -0.846 5.846 12 Si 0.967 3.033 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.273 1.273 16 C 0.155 3.845 17 N -0.665 5.665 18 C 0.142 3.858 19 H 0.050 0.950 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.271 0.729 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.351 0.649 26 H 0.093 0.907 27 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 5.565 0.475 5.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.251 4.251 3 N -0.130 5.130 4 H 0.241 0.759 5 C -0.183 4.183 6 C -0.228 4.228 7 C 0.013 3.987 8 C -0.519 4.519 9 H 0.079 0.921 10 C -0.179 4.179 11 N -0.476 5.476 12 Si 0.790 3.210 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.198 1.198 16 C 0.026 3.974 17 N -0.295 5.295 18 C 0.012 3.988 19 H 0.068 0.932 20 H 0.074 0.926 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.167 0.833 26 H 0.111 0.889 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.565 5.572 1.065 5.701 hybrid contribution -0.117 -0.688 -0.945 1.175 sum 0.448 4.884 0.120 4.906 Atomic orbital electron populations 1.19734 0.87308 1.01457 1.00768 1.20659 0.93277 0.85350 1.25841 1.39959 1.02566 1.07307 1.63140 0.75868 1.21106 0.87199 0.96302 1.13733 1.21315 0.94318 0.93529 1.13631 1.18139 0.89266 0.92405 0.98843 1.18892 0.99922 0.91306 1.41823 0.92071 1.26343 0.94715 1.04100 0.92712 1.70028 1.10767 1.35798 1.31015 0.85396 0.78931 0.78241 0.78419 1.18808 1.19865 1.19846 1.20167 0.89589 0.90806 0.96816 1.63755 1.05236 1.02212 1.58307 1.20692 0.84437 0.94051 0.99582 0.93156 0.92587 0.91268 0.91880 0.94453 0.94540 0.83322 0.88938 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.36 10.22 71.24 0.73 -0.63 15 2 C -0.14 -6.95 7.29 42.34 0.31 -6.64 15 3 N -0.53 -22.69 5.91 -168.12 -0.99 -23.68 15 4 H 0.41 13.55 8.96 -92.70 -0.83 12.72 15 5 C -0.07 -3.21 8.15 41.12 0.34 -2.88 15 6 C -0.22 -11.73 6.19 -18.44 -0.11 -11.85 15 7 C 0.02 1.16 5.91 -20.04 -0.12 1.04 15 8 C -0.49 -28.29 9.11 23.38 0.21 -28.08 15 9 H 0.06 3.46 7.56 -2.91 -0.02 3.44 15 10 C 0.03 1.71 5.39 85.16 0.46 2.17 15 11 N -0.85 -47.43 9.90 21.79 0.22 -47.22 15 12 Si 0.97 42.44 29.59 68.60 2.03 44.47 15 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 16 C 0.15 7.54 5.75 85.39 0.49 8.03 15 17 N -0.67 -25.50 7.77 -514.29 -3.99 -29.50 15 18 C 0.14 5.13 7.47 85.56 0.64 5.77 15 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.06 2.22 7.78 -2.39 -0.02 2.20 15 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.27 14.05 8.30 -92.71 -0.77 13.28 15 23 H 0.04 1.88 7.49 -2.39 -0.02 1.86 15 24 H 0.04 1.92 8.11 -2.38 -0.02 1.90 15 25 H 0.35 10.84 8.92 -89.70 -0.80 10.04 15 26 H 0.09 2.83 8.14 -2.39 -0.02 2.81 15 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -67.02 229.65 -0.24 -67.26 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.44 Total: 21.72 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 2.94 Total: -33.06 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.77 Total: -100.40 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.02 -0.24 -67.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152063.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.474 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds