Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99781 * 3 2 1 6 6 H 1.48500 * 109.47222 * 60.00072 * 3 2 1 7 7 C 1.37874 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.35315 * 126.03821 * 265.02728 * 10 9 7 12 12 N 1.34953 * 107.74731 * 179.97438 * 11 10 9 13 13 H 0.96991 * 126.03814 * 179.97438 * 12 11 10 14 14 N 1.40090 * 107.92071 * 359.75620 * 12 11 10 15 15 C 1.30844 * 108.20696 * 0.41043 * 14 12 11 16 16 C 1.50690 * 125.89800 * 179.85373 * 15 14 12 17 17 C 1.53000 * 117.50063 * 59.69768 * 16 15 14 18 18 C 1.53002 * 60.02940 * 252.49714 * 17 16 15 19 19 H 0.96997 * 119.99571 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46842 * 60.00160 * 9 7 2 21 21 H 1.08996 * 109.47345 * 300.00149 * 9 7 2 22 22 H 1.07998 * 126.13022 * 359.94430 * 11 10 9 23 23 H 1.09008 * 115.56062 * 205.38398 * 16 15 14 24 24 H 1.09002 * 117.49833 * 359.97438 * 17 16 15 25 25 H 1.09002 * 117.49953 * 144.99860 * 17 16 15 26 26 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 27 27 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 6 2.6755 -4.3114 -1.0895 12 7 3.5364 -5.2611 -0.6676 13 1 4.0110 -5.8921 -1.2311 14 7 3.6274 -5.1715 0.7274 15 6 2.8400 -4.2060 1.1272 16 6 2.6310 -3.7701 2.5545 17 6 3.8560 -3.2829 3.3310 18 6 3.2361 -4.6433 3.6564 19 1 -0.4849 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 2.3922 -4.1185 -2.1137 23 1 1.6772 -3.2854 2.7634 24 1 4.8132 -3.2780 2.8095 25 1 3.7082 -2.4774 4.0504 26 1 3.7855 -5.5332 3.3491 27 1 2.6804 -4.7328 4.5898 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = 86.359108 kcal Electronic energy + Delta-G solvation = -11515.938561 eV Core-core repulsion = 9468.842502 eV Total energy + Delta-G solvation = -2047.096059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48537 -36.46696 -33.31884 -30.96100 -30.08690 -26.55872 -23.42696 -22.82835 -21.90293 -19.53511 -18.51409 -16.94036 -16.14597 -15.03151 -14.41631 -14.15731 -13.80374 -12.60824 -12.32900 -11.92263 -11.65850 -11.11237 -11.03948 -10.80350 -10.52157 -10.40832 -10.17188 -9.83529 -9.45063 -9.28988 -8.49151 -8.32838 -7.44603 -5.94234 -3.96290 2.55011 3.33826 3.40929 3.44889 3.52313 3.55286 4.48380 4.55204 5.11405 5.34217 5.40237 5.54127 5.66297 5.76025 6.03707 6.24724 6.41508 6.55851 6.56973 6.71527 6.91807 7.46131 7.69670 7.80882 7.97689 8.03084 8.42442 8.48976 9.09184 9.66823 11.15273 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.012023 C = 0.010240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.603060 B = 2328.277901 C = 2733.636332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.085 3.915 10 C -0.173 4.173 11 C 0.026 3.974 12 N -0.494 5.494 13 H 0.429 0.571 14 N -0.314 5.314 15 C 0.108 3.892 16 C -0.062 4.062 17 C -0.161 4.161 18 C -0.178 4.178 19 H 0.259 0.741 20 H 0.022 0.978 21 H 0.027 0.973 22 H 0.168 0.832 23 H 0.126 0.874 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -7.354 1.834 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.047 3.953 10 C -0.184 4.184 11 C -0.119 4.119 12 N -0.203 5.203 13 H 0.271 0.729 14 N -0.138 5.138 15 C -0.058 4.058 16 C -0.082 4.082 17 C -0.199 4.199 18 C -0.215 4.215 19 H 0.069 0.931 20 H 0.041 0.959 21 H 0.045 0.955 22 H 0.185 0.815 23 H 0.144 0.856 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.647 -8.117 2.164 10.121 hybrid contribution 0.143 1.335 -0.798 1.562 sum 5.790 -6.781 1.366 9.021 Atomic orbital electron populations 1.69967 1.05935 1.26403 1.51450 1.24990 0.94804 0.99011 0.95631 0.86571 0.80187 0.83975 0.77521 1.19834 1.21146 1.21022 1.21169 0.92983 0.90159 1.49563 0.92779 1.17652 0.91610 0.88385 0.97681 1.20781 1.05469 1.02084 0.90047 1.22284 0.96323 0.93170 1.00079 1.45959 1.38388 1.30239 1.05677 0.72872 1.76973 1.24615 1.22789 0.89449 1.21215 0.95576 0.94033 0.94972 1.20222 0.98984 1.03204 0.85762 1.22879 0.97175 0.97139 1.02726 1.22972 1.04399 0.95065 0.99106 0.93109 0.95934 0.95527 0.81491 0.85629 0.89146 0.88518 0.88625 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.78 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.50 -14.05 9.09 -34.44 -0.31 -14.36 15 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 15 9 C 0.08 2.19 5.24 -29.03 -0.15 2.04 15 10 C -0.17 -3.89 5.29 -105.05 -0.56 -4.45 15 11 C 0.03 0.48 11.90 -17.22 -0.20 0.28 15 12 N -0.49 -8.40 7.36 30.45 0.22 -8.18 15 13 H 0.43 5.42 8.96 -182.61 -1.64 3.78 15 14 N -0.31 -6.18 12.28 33.67 0.41 -5.77 15 15 C 0.11 2.27 6.75 -82.41 -0.56 1.71 15 16 C -0.06 -1.17 6.03 -91.74 -0.55 -1.72 15 17 C -0.16 -2.67 10.23 -26.73 -0.27 -2.95 15 18 C -0.18 -2.74 10.14 -26.69 -0.27 -3.01 15 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 20 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.03 0.72 7.64 -51.93 -0.40 0.32 15 22 H 0.17 2.67 8.06 -52.49 -0.42 2.25 15 23 H 0.13 2.43 7.66 -51.92 -0.40 2.04 15 24 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 25 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 26 H 0.10 1.49 7.90 -51.93 -0.41 1.08 15 27 H 0.09 1.21 8.14 -51.93 -0.42 0.78 15 LS Contribution 242.75 15.07 3.66 3.66 Total: -1.00 -31.41 242.75 -7.46 -38.87 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.50 Total: 1.51 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.98 Total: -20.95 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 1.37 Total: -39.72 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.41 -7.46 -38.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.228 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds