Wall clock time and date at job start Mon Mar 30 2020 01:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99781 * 3 2 1 6 6 H 1.48500 * 109.47222 * 60.00072 * 3 2 1 7 7 C 1.37874 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.35315 * 126.03821 * 265.02728 * 10 9 7 12 12 N 1.34953 * 107.74731 * 179.97438 * 11 10 9 13 13 H 0.96991 * 126.03814 * 179.97438 * 12 11 10 14 14 N 1.40090 * 107.92071 * 359.75620 * 12 11 10 15 15 C 1.30844 * 108.20696 * 0.41043 * 14 12 11 16 16 C 1.50690 * 125.89800 * 179.85373 * 15 14 12 17 17 C 1.53000 * 117.50063 * 59.69768 * 16 15 14 18 18 C 1.53002 * 60.02940 * 252.49714 * 17 16 15 19 19 H 0.96997 * 119.99571 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46842 * 60.00160 * 9 7 2 21 21 H 1.08996 * 109.47345 * 300.00149 * 9 7 2 22 22 H 1.07998 * 126.13022 * 359.94430 * 11 10 9 23 23 H 1.09008 * 115.56062 * 205.38398 * 16 15 14 24 24 H 1.09002 * 117.49833 * 359.97438 * 17 16 15 25 25 H 1.09002 * 117.49953 * 144.99860 * 17 16 15 26 26 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 27 27 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 6 2.6755 -4.3114 -1.0895 12 7 3.5364 -5.2611 -0.6676 13 1 4.0110 -5.8921 -1.2311 14 7 3.6274 -5.1715 0.7274 15 6 2.8400 -4.2060 1.1272 16 6 2.6310 -3.7701 2.5545 17 6 3.8560 -3.2829 3.3310 18 6 3.2361 -4.6433 3.6564 19 1 -0.4849 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 2.3922 -4.1185 -2.1137 23 1 1.6772 -3.2854 2.7634 24 1 4.8132 -3.2780 2.8095 25 1 3.7082 -2.4774 4.0504 26 1 3.7855 -5.5332 3.3491 27 1 2.6804 -4.7328 4.5898 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:24 Heat of formation + Delta-G solvation = 66.620160 kcal Electronic energy + Delta-G solvation = -11516.794506 eV Core-core repulsion = 9468.842502 eV Total energy + Delta-G solvation = -2047.952004 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.02282 -37.82041 -35.39418 -32.78890 -31.66211 -28.48359 -24.91815 -24.80536 -23.17522 -21.12745 -20.00687 -18.59716 -18.24562 -16.43010 -16.37207 -15.59212 -15.34366 -14.31441 -14.17647 -13.88222 -13.37474 -12.80438 -12.67585 -12.39609 -12.30645 -11.96645 -11.79735 -11.47352 -11.45105 -11.01213 -10.50616 -9.94864 -9.12268 -8.09460 -6.20926 1.03274 1.42046 1.43034 1.55580 1.91412 2.15929 2.48285 3.14744 3.20108 3.72151 3.94319 4.15479 4.29283 4.36671 4.80920 4.86295 4.90786 4.99252 5.14468 5.32046 5.36106 5.46182 5.79084 5.84991 5.87132 6.34258 6.62289 6.90353 6.91472 7.46568 8.98805 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.012023 C = 0.010240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.603060 B = 2328.277901 C = 2733.636332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.046 0.954 9 C 0.099 3.901 10 C -0.224 4.224 11 C 0.050 3.950 12 N -0.472 5.472 13 H 0.451 0.549 14 N -0.321 5.321 15 C 0.098 3.902 16 C -0.099 4.099 17 C -0.158 4.158 18 C -0.146 4.146 19 H 0.263 0.737 20 H 0.002 0.998 21 H 0.000 1.000 22 H 0.198 0.802 23 H 0.108 0.892 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -7.641 1.838 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.061 3.939 10 C -0.235 4.235 11 C -0.097 4.097 12 N -0.183 5.183 13 H 0.298 0.702 14 N -0.146 5.146 15 C -0.066 4.066 16 C -0.120 4.120 17 C -0.196 4.196 18 C -0.183 4.183 19 H 0.072 0.928 20 H 0.021 0.979 21 H 0.018 0.982 22 H 0.215 0.785 23 H 0.126 0.874 24 H 0.102 0.898 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.064 -8.441 2.163 11.217 hybrid contribution -0.294 1.353 -0.845 1.622 sum 6.770 -7.088 1.318 9.890 Atomic orbital electron populations 1.70081 1.07448 1.27507 1.52217 1.25810 0.95635 1.02593 0.95139 0.85520 0.78871 0.79537 0.77852 1.19398 1.20328 1.20312 1.21398 0.92657 0.91498 1.49452 0.93599 1.17296 0.91724 0.89535 0.95311 1.20619 1.07386 1.03166 0.92362 1.22587 0.94746 0.91842 1.00511 1.45964 1.37353 1.29736 1.05201 0.70220 1.76924 1.24605 1.22430 0.90640 1.21437 0.95494 0.94084 0.95629 1.20261 0.99332 1.06194 0.86170 1.22949 0.95692 0.98687 1.02262 1.23028 1.02670 0.94182 0.98418 0.92812 0.97945 0.98216 0.78540 0.87369 0.89829 0.87020 0.88533 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.62 15 2 C 0.01 0.32 5.46 84.65 0.46 0.79 15 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 7 C -0.51 -29.23 9.09 25.60 0.23 -29.00 15 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 15 9 C 0.10 5.33 5.24 29.10 0.15 5.48 15 10 C -0.22 -10.14 5.29 -20.14 -0.11 -10.25 15 11 C 0.05 1.79 11.90 83.54 0.99 2.79 15 12 N -0.47 -14.95 7.36 -57.59 -0.42 -15.38 15 13 H 0.45 9.97 8.96 -213.34 -1.91 8.05 15 14 N -0.32 -12.17 12.28 -47.39 -0.58 -12.76 15 15 C 0.10 4.14 6.75 43.10 0.29 4.43 15 16 C -0.10 -3.77 6.03 -11.52 -0.07 -3.83 15 17 C -0.16 -5.07 10.23 30.60 0.31 -4.75 15 18 C -0.15 -4.22 10.14 30.62 0.31 -3.91 15 19 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 20 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 21 H 0.00 -0.02 7.64 -2.39 -0.02 -0.04 15 22 H 0.20 5.81 8.06 -2.91 -0.02 5.78 15 23 H 0.11 4.38 7.66 -2.38 -0.02 4.37 15 24 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 25 H 0.11 3.19 8.14 -2.39 -0.02 3.17 15 26 H 0.10 2.80 7.90 -2.39 -0.02 2.78 15 27 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 Total: -1.00 -67.42 242.75 3.14 -64.27 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -0.74 Total: 11.25 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 2.58 Total: -38.27 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -0.72 Total: -83.76 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.42 3.14 -64.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.892 kcal (2) G-P(sol) polarization free energy of solvation -67.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds