Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31018 * 125.17850 * 2 1 4 4 C 1.33010 * 109.98341 * 180.02562 * 3 2 1 5 5 C 1.39624 * 107.46391 * 359.97438 * 4 3 2 6 6 C 1.40063 * 127.06124 * 180.26274 * 5 4 3 7 7 H 1.08000 * 119.99949 * 179.68893 * 6 5 4 8 8 C 1.40070 * 119.99980 * 359.69054 * 6 5 4 9 9 N 1.30852 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99869 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46987 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46785 * 120.00106 * 10 8 6 13 13 H 1.48499 * 109.47143 * 239.99950 * 10 8 6 14 14 N 1.35072 * 125.17856 * 180.02562 * 2 1 3 15 15 C 1.46501 * 126.48291 * 359.93445 * 14 2 1 16 16 C 1.52999 * 117.50000 * 312.36849 * 15 14 2 17 17 C 1.52999 * 117.49545 * 243.70949 * 15 14 2 18 18 H 1.08997 * 109.47263 * 264.81633 * 1 2 3 19 19 H 1.09003 * 109.47066 * 24.81593 * 1 2 3 20 20 H 1.09001 * 109.46877 * 144.81440 * 1 2 3 21 21 H 1.08002 * 126.27301 * 180.02562 * 4 3 2 22 22 H 0.96999 * 119.99903 * 180.02562 * 9 8 6 23 23 H 1.08997 * 115.55150 * 98.04328 * 15 14 2 24 24 H 1.09004 * 117.49695 * 0.02562 * 16 15 14 25 25 H 1.08999 * 117.50132 * 145.01990 * 16 15 14 26 26 H 1.09002 * 117.50270 * 214.97915 * 17 15 14 27 27 H 1.09002 * 117.50170 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2618 1.0709 0.0000 4 6 3.5454 0.7223 -0.0006 5 6 3.6007 -0.6729 -0.0003 6 6 4.7509 -1.4721 0.0044 7 1 4.6606 -2.5483 0.0091 8 6 6.0182 -0.8755 0.0030 9 7 6.1276 0.4284 -0.0032 10 14 7.5523 -1.9415 0.0100 11 1 7.1598 -3.3736 0.0158 12 1 8.3597 -1.6548 -1.2030 13 1 8.3568 -1.6432 1.2220 14 7 2.2851 -1.1040 -0.0005 15 6 1.8242 -2.4946 0.0002 16 6 0.7348 -2.8773 1.0040 17 6 2.1737 -3.3540 1.2169 18 1 -0.3633 -0.0928 1.0234 19 1 -0.3633 0.9328 -0.4313 20 1 -0.3633 -0.8399 -0.5922 21 1 4.3903 1.3951 -0.0003 22 1 7.0052 0.8415 -0.0045 23 1 1.8060 -2.9844 -0.9733 24 1 0.3607 -2.0942 1.6636 25 1 -0.0001 -3.6190 0.6909 26 1 2.3850 -4.4093 1.0438 27 1 2.7469 -2.8849 2.0166 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156631.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = 71.303932 kcal Electronic energy + Delta-G solvation = -11849.782329 eV Core-core repulsion = 9802.033429 eV Total energy + Delta-G solvation = -2047.748901 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03524 -36.32885 -33.63514 -30.52038 -30.09410 -27.21488 -23.50885 -22.11672 -22.06294 -19.59185 -18.05720 -17.09039 -15.78488 -15.00696 -14.40357 -13.39860 -13.13574 -12.94526 -12.28822 -11.95476 -11.69422 -11.41423 -11.23745 -11.09306 -10.81955 -10.61533 -10.29907 -10.13984 -9.82489 -9.33747 -8.11170 -8.03769 -6.79015 -6.57459 -4.15818 2.96914 3.10819 3.15416 3.69019 3.92554 4.08429 4.22170 4.75934 5.17989 5.24020 5.36982 5.53977 5.84820 5.94560 6.04379 6.13915 6.34292 6.35461 6.49909 6.58931 7.08953 7.22717 7.73174 7.89845 8.06012 8.57595 8.95838 9.09920 9.19564 10.05799 10.38314 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042474 B = 0.013985 C = 0.010823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.061967 B = 2001.668270 C = 2586.480556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C 0.071 3.929 3 N -0.481 5.481 4 C -0.136 4.136 5 C 0.180 3.820 6 C -0.438 4.438 7 H 0.072 0.928 8 C 0.070 3.930 9 N -0.803 5.803 10 Si 0.923 3.077 11 H -0.265 1.265 12 H -0.275 1.275 13 H -0.275 1.275 14 N -0.470 5.470 15 C 0.085 3.915 16 C -0.181 4.181 17 C -0.171 4.171 18 H 0.048 0.952 19 H 0.065 0.935 20 H 0.050 0.950 21 H 0.185 0.815 22 H 0.277 0.723 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -6.912 0.933 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.181 4.181 3 N -0.201 5.201 4 C -0.285 4.285 5 C 0.070 3.930 6 C -0.473 4.473 7 H 0.090 0.910 8 C -0.146 4.146 9 N -0.431 5.431 10 Si 0.748 3.252 11 H -0.189 1.189 12 H -0.200 1.200 13 H -0.200 1.200 14 N -0.164 5.164 15 C -0.021 4.021 16 C -0.219 4.219 17 C -0.209 4.209 18 H 0.066 0.934 19 H 0.084 0.916 20 H 0.069 0.931 21 H 0.201 0.799 22 H 0.088 0.912 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.696 -5.987 0.926 7.665 hybrid contribution 1.116 -1.373 -0.023 1.769 sum -3.580 -7.360 0.903 8.234 Atomic orbital electron populations 1.19713 0.88279 1.01336 1.00204 1.22053 0.93643 0.82113 1.20249 1.69450 1.04731 1.28469 1.17434 1.23375 0.92037 0.92852 1.20205 1.19025 0.81236 0.94107 0.98635 1.18411 0.88594 0.93649 1.46681 0.90990 1.25667 1.00368 0.95198 0.93372 1.69633 1.25433 1.10122 1.37917 0.86023 0.80428 0.80343 0.78397 1.18855 1.20007 1.20008 1.44350 1.06784 1.02935 1.62285 1.21313 1.02467 0.83741 0.94539 1.23271 0.92262 1.03418 1.02910 1.23203 0.97510 0.99520 1.00682 0.93367 0.91616 0.93095 0.79855 0.91202 0.87263 0.88353 0.88346 0.88411 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.69 9.00 36.00 0.32 -0.37 15 2 C 0.07 1.78 7.77 -154.96 -1.20 0.58 15 3 N -0.48 -13.63 11.18 -9.76 -0.11 -13.74 15 4 C -0.14 -4.04 10.88 -16.52 -0.18 -4.22 15 5 C 0.18 5.09 6.73 -83.68 -0.56 4.52 15 6 C -0.44 -11.85 9.12 -38.21 -0.35 -12.20 15 7 H 0.07 1.84 7.65 -52.49 -0.40 1.44 15 8 C 0.07 1.80 5.50 -17.28 -0.10 1.71 15 9 N -0.80 -21.56 10.35 55.56 0.57 -20.98 15 10 Si 0.92 19.20 29.56 -169.99 -5.03 14.18 15 11 H -0.26 -5.39 7.11 56.52 0.40 -4.98 15 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 14 N -0.47 -11.59 3.08 -103.94 -0.32 -11.91 15 15 C 0.09 1.65 5.96 -67.93 -0.40 1.24 15 16 C -0.18 -2.77 9.31 -26.69 -0.25 -3.02 15 17 C -0.17 -2.89 10.36 -26.69 -0.28 -3.16 15 18 H 0.05 0.82 7.66 -51.93 -0.40 0.43 15 19 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 20 H 0.05 0.84 7.75 -51.93 -0.40 0.44 15 21 H 0.18 5.61 5.78 -52.49 -0.30 5.31 15 22 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 23 H 0.11 1.96 8.14 -51.93 -0.42 1.54 15 24 H 0.10 1.59 7.19 -51.93 -0.37 1.21 15 25 H 0.10 1.19 8.14 -51.93 -0.42 0.76 15 26 H 0.10 1.37 8.14 -51.93 -0.42 0.95 15 27 H 0.10 1.93 8.14 -51.93 -0.42 1.51 15 LS Contribution 235.15 15.07 3.54 3.54 Total: -1.00 -31.04 235.15 -7.46 -38.50 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.13 Total: 5.32 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -3.00 Total: -14.91 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.15 Total: -46.63 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.04 -7.46 -38.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156631.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.800 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds