Wall clock time and date at job start Mon Mar 30 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31018 * 125.17850 * 2 1 4 4 C 1.33010 * 109.98341 * 180.02562 * 3 2 1 5 5 C 1.39624 * 107.46391 * 359.97438 * 4 3 2 6 6 C 1.40063 * 127.06124 * 180.26274 * 5 4 3 7 7 H 1.08000 * 119.99949 * 179.68893 * 6 5 4 8 8 C 1.40070 * 119.99980 * 359.69054 * 6 5 4 9 9 N 1.30852 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99869 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46987 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46785 * 120.00106 * 10 8 6 13 13 H 1.48499 * 109.47143 * 239.99950 * 10 8 6 14 14 N 1.35072 * 125.17856 * 180.02562 * 2 1 3 15 15 C 1.46501 * 126.48291 * 359.93445 * 14 2 1 16 16 C 1.52999 * 117.50000 * 312.36849 * 15 14 2 17 17 C 1.52999 * 117.49545 * 243.70949 * 15 14 2 18 18 H 1.08997 * 109.47263 * 264.81633 * 1 2 3 19 19 H 1.09003 * 109.47066 * 24.81593 * 1 2 3 20 20 H 1.09001 * 109.46877 * 144.81440 * 1 2 3 21 21 H 1.08002 * 126.27301 * 180.02562 * 4 3 2 22 22 H 0.96999 * 119.99903 * 180.02562 * 9 8 6 23 23 H 1.08997 * 115.55150 * 98.04328 * 15 14 2 24 24 H 1.09004 * 117.49695 * 0.02562 * 16 15 14 25 25 H 1.08999 * 117.50132 * 145.01990 * 16 15 14 26 26 H 1.09002 * 117.50270 * 214.97915 * 17 15 14 27 27 H 1.09002 * 117.50170 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2618 1.0709 0.0000 4 6 3.5454 0.7223 -0.0006 5 6 3.6007 -0.6729 -0.0003 6 6 4.7509 -1.4721 0.0044 7 1 4.6606 -2.5483 0.0091 8 6 6.0182 -0.8755 0.0030 9 7 6.1276 0.4284 -0.0032 10 14 7.5523 -1.9415 0.0100 11 1 7.1598 -3.3736 0.0158 12 1 8.3597 -1.6548 -1.2030 13 1 8.3568 -1.6432 1.2220 14 7 2.2851 -1.1040 -0.0005 15 6 1.8242 -2.4946 0.0002 16 6 0.7348 -2.8773 1.0040 17 6 2.1737 -3.3540 1.2169 18 1 -0.3633 -0.0928 1.0234 19 1 -0.3633 0.9328 -0.4313 20 1 -0.3633 -0.8399 -0.5922 21 1 4.3903 1.3951 -0.0003 22 1 7.0052 0.8415 -0.0045 23 1 1.8060 -2.9844 -0.9733 24 1 0.3607 -2.0942 1.6636 25 1 -0.0001 -3.6190 0.6909 26 1 2.3850 -4.4093 1.0438 27 1 2.7469 -2.8849 2.0166 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156631.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:28 Heat of formation + Delta-G solvation = 52.108483 kcal Electronic energy + Delta-G solvation = -11850.614706 eV Core-core repulsion = 9802.033429 eV Total energy + Delta-G solvation = -2048.581278 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.95001 -37.80775 -35.61028 -32.39561 -31.88373 -29.10481 -25.48061 -23.68557 -23.41884 -21.57981 -19.83814 -18.96813 -17.56972 -16.61812 -16.10250 -15.08934 -14.78124 -14.71042 -14.08707 -13.71609 -13.32749 -13.02015 -12.86446 -12.68109 -12.47160 -12.35911 -11.95045 -11.62874 -11.30874 -11.24175 -10.17020 -9.96542 -8.84147 -8.51015 -6.23358 1.27872 1.39847 1.56516 1.84170 2.19030 2.49335 2.73338 2.75906 3.38997 3.80407 3.94833 4.06141 4.23376 4.56451 4.68799 4.82780 4.89758 5.00158 5.07076 5.19048 5.21989 5.25639 5.72551 5.85929 6.02727 6.55595 6.89601 7.00012 7.31229 8.00429 8.47104 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042474 B = 0.013985 C = 0.010823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.061967 B = 2001.668270 C = 2586.480556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C 0.087 3.913 3 N -0.524 5.524 4 C -0.187 4.187 5 C 0.157 3.843 6 C -0.463 4.463 7 H 0.081 0.919 8 C 0.021 3.979 9 N -0.838 5.838 10 Si 1.004 2.996 11 H -0.253 1.253 12 H -0.268 1.268 13 H -0.268 1.268 14 N -0.473 5.473 15 C 0.041 3.959 16 C -0.142 4.142 17 C -0.170 4.170 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.161 0.839 22 H 0.284 0.716 23 H 0.123 0.877 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.130 0.870 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 -9.544 1.062 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.169 4.169 3 N -0.245 5.245 4 C -0.333 4.333 5 C 0.045 3.955 6 C -0.498 4.498 7 H 0.099 0.901 8 C -0.192 4.192 9 N -0.467 5.467 10 Si 0.824 3.176 11 H -0.176 1.176 12 H -0.193 1.193 13 H -0.193 1.193 14 N -0.166 5.166 15 C -0.063 4.063 16 C -0.179 4.179 17 C -0.207 4.207 18 H 0.091 0.909 19 H 0.091 0.909 20 H 0.099 0.901 21 H 0.178 0.822 22 H 0.094 0.906 23 H 0.141 0.859 24 H 0.110 0.890 25 H 0.163 0.837 26 H 0.148 0.852 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.854 -8.629 1.058 10.481 hybrid contribution 1.343 -0.538 -0.053 1.448 sum -4.511 -9.168 1.005 10.267 Atomic orbital electron populations 1.19925 0.83792 1.03115 1.02425 1.23274 0.96099 0.81641 1.15867 1.69384 1.04563 1.30533 1.19989 1.23185 0.92403 0.93896 1.23834 1.19289 0.83323 0.93888 0.99016 1.18734 0.89171 0.94012 1.47865 0.90115 1.26807 1.03689 0.96536 0.92132 1.69766 1.26669 1.12123 1.38108 0.84827 0.75525 0.78585 0.78642 1.17641 1.19278 1.19256 1.44610 1.05520 1.05254 1.61184 1.21803 1.06503 0.81473 0.96511 1.23415 0.91849 1.03135 0.99485 1.23245 0.98827 1.00509 0.98157 0.90927 0.90887 0.90056 0.82246 0.90550 0.85917 0.89039 0.83719 0.85167 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.19 9.00 71.23 0.64 -0.55 15 2 C 0.09 4.29 7.77 137.97 1.07 5.36 15 3 N -0.52 -30.66 11.18 -184.81 -2.07 -32.73 15 4 C -0.19 -11.72 10.88 84.85 0.92 -10.80 15 5 C 0.16 9.12 6.73 38.88 0.26 9.38 15 6 C -0.46 -25.59 9.12 23.16 0.21 -25.38 15 7 H 0.08 4.15 7.65 -2.91 -0.02 4.13 15 8 C 0.02 1.10 5.50 85.28 0.47 1.56 15 9 N -0.84 -46.93 10.35 21.86 0.23 -46.70 15 10 Si 1.00 39.37 29.56 68.60 2.03 41.40 15 11 H -0.25 -9.36 7.11 99.48 0.71 -8.65 15 12 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 13 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 14 N -0.47 -23.28 3.08 -482.74 -1.49 -24.76 15 15 C 0.04 1.49 5.96 44.99 0.27 1.76 15 16 C -0.14 -3.71 9.31 30.62 0.29 -3.43 15 17 C -0.17 -5.27 10.36 30.62 0.32 -4.95 15 18 H 0.07 2.22 7.66 -2.39 -0.02 2.20 15 19 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 20 H 0.08 2.35 7.75 -2.39 -0.02 2.33 15 21 H 0.16 10.53 5.78 -2.91 -0.02 10.52 15 22 H 0.28 14.32 8.30 -92.71 -0.77 13.55 15 23 H 0.12 4.08 8.14 -2.39 -0.02 4.06 15 24 H 0.09 2.57 7.19 -2.38 -0.02 2.56 15 25 H 0.14 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.13 3.15 8.14 -2.39 -0.02 3.13 15 27 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 Total: -1.00 -71.57 235.15 4.31 -67.26 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 1.16 Total: 22.56 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 4.45 Total: -27.04 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.33 Total: -104.19 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -71.57 4.31 -67.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156631.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.369 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds