Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39532 * 119.99936 * 2 1 4 4 N 1.40096 * 126.10133 * 0.02562 * 3 2 1 5 5 C 1.30859 * 108.25259 * 179.97438 * 4 3 2 6 6 C 1.39921 * 108.36664 * 0.02562 * 5 4 3 7 7 C 1.35334 * 107.96690 * 359.77262 * 6 5 4 8 8 C 1.50693 * 126.18986 * 180.22759 * 7 6 5 9 9 H 1.09001 * 109.47558 * 155.16248 * 8 7 6 10 10 C 1.52999 * 109.47329 * 275.16371 * 8 7 6 11 11 C 1.50700 * 109.47306 * 35.16378 * 8 7 6 12 12 H 1.08002 * 120.00159 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99912 * 180.02562 * 11 8 7 14 14 N 1.31515 * 120.00168 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99997 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47087 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47291 * 119.99487 * 15 13 11 18 18 H 1.48500 * 109.46990 * 240.00011 * 15 13 11 19 19 H 1.08002 * 120.00369 * 0.02562 * 1 2 3 20 20 H 1.08005 * 119.99863 * 179.72393 * 1 2 3 21 21 H 1.08002 * 120.00369 * 179.97438 * 2 1 3 22 22 H 1.07996 * 125.82051 * 180.02562 * 5 4 3 23 23 H 1.07998 * 126.01812 * 179.97438 * 6 5 4 24 24 H 1.08998 * 109.47659 * 180.02562 * 10 8 7 25 25 H 1.09000 * 109.46782 * 300.00096 * 10 8 7 26 26 H 1.08996 * 109.47172 * 59.99857 * 10 8 7 27 27 H 0.96996 * 119.99827 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 7 1.4486 2.4892 0.0005 5 6 2.4188 3.3674 0.0009 6 6 3.6368 2.6788 0.0000 7 6 3.3667 1.3527 0.0042 8 6 4.3808 0.2381 0.0098 9 1 3.9348 -0.6568 0.4439 10 6 4.8224 -0.0569 -1.4250 11 6 5.5766 0.6510 0.8286 12 1 5.6002 1.6236 1.2977 13 6 6.6412 -0.2124 0.9781 14 7 6.6128 -1.3965 0.4065 15 14 8.1232 0.2992 1.9936 16 1 7.9093 1.6687 2.5265 17 1 8.3012 -0.6493 3.1222 18 1 9.3376 0.2851 1.1390 19 1 -0.5401 0.9353 -0.0004 20 1 -0.5400 -0.9354 -0.0045 21 1 1.8586 -0.9353 0.0004 22 1 2.2997 4.4408 0.0017 23 1 4.6195 3.1267 -0.0003 24 1 5.5556 -0.8634 -1.4211 25 1 3.9574 -0.3556 -2.0172 26 1 5.2684 0.8379 -1.8591 27 1 7.3616 -2.0040 0.5119 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158591.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 73.185712 kcal Electronic energy + Delta-G solvation = -11664.393225 eV Core-core repulsion = 9616.725925 eV Total energy + Delta-G solvation = -2047.667300 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.20214 -36.42878 -35.64944 -33.22823 -30.57977 -29.56285 -27.23898 -24.15430 -23.61495 -21.35828 -19.86065 -18.12778 -17.94837 -16.48484 -15.96874 -15.50840 -15.20796 -14.74076 -14.12522 -13.54191 -13.48424 -12.99805 -12.88821 -12.82232 -12.44657 -12.20249 -11.90385 -11.86935 -11.38282 -11.03893 -10.52328 -9.69515 -9.08241 -8.14496 -6.27152 0.41657 1.43751 1.46336 1.57294 1.72105 1.86220 2.02614 2.44817 3.16078 3.73952 4.06367 4.20127 4.49231 4.76274 4.84267 4.88748 4.97684 5.07955 5.23356 5.28710 5.44695 5.57069 5.76059 5.89739 5.95480 6.19978 6.47324 6.77603 6.86722 7.41237 8.91951 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.011297 C = 0.010087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.655315 B = 2477.986720 C = 2775.220373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.348 5.348 4 N -0.337 5.337 5 C 0.058 3.942 6 C -0.282 4.282 7 C 0.108 3.892 8 C 0.100 3.900 9 H 0.016 0.984 10 C -0.118 4.118 11 C -0.525 4.525 12 H 0.061 0.939 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.960 3.040 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.278 1.278 19 H 0.102 0.898 20 H 0.154 0.846 21 H 0.157 0.843 22 H 0.221 0.779 23 H 0.149 0.851 24 H 0.071 0.929 25 H 0.023 0.977 26 H 0.033 0.967 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 3.605 -0.959 7.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.059 4.059 3 N -0.125 5.125 4 N -0.156 5.156 5 C -0.128 4.128 6 C -0.310 4.310 7 C -0.015 4.015 8 C 0.080 3.920 9 H 0.034 0.966 10 C -0.176 4.176 11 C -0.563 4.563 12 H 0.079 0.921 13 C -0.181 4.181 14 N -0.555 5.555 15 Si 0.785 3.215 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.204 1.204 19 H 0.120 0.880 20 H 0.172 0.828 21 H 0.174 0.826 22 H 0.238 0.762 23 H 0.167 0.833 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.256 3.198 -0.982 7.990 hybrid contribution 1.770 0.083 0.470 1.833 sum -5.486 3.281 -0.512 6.413 Atomic orbital electron populations 1.24108 0.93288 1.04411 1.01660 1.21614 0.94712 0.85647 1.03888 1.46371 1.04273 1.05155 1.56744 1.77125 1.23435 0.87503 1.27559 1.24473 0.89702 1.00988 0.97658 1.21448 0.99961 0.92009 1.17615 1.22299 0.84027 0.98759 0.96428 1.17418 0.90249 0.89292 0.95041 0.96574 1.21593 0.99644 1.01311 0.95094 1.21369 1.01628 1.02126 1.31175 0.92076 1.25679 1.00984 0.94813 0.96634 1.69984 1.32558 1.08306 1.44603 0.85470 0.79115 0.78485 0.78416 1.19147 1.20762 1.20372 0.87958 0.82825 0.82574 0.76220 0.83340 0.91014 0.95818 0.94823 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.49 14.35 67.01 0.96 -4.52 15 2 C 0.05 1.80 10.47 82.66 0.87 2.67 15 3 N -0.35 -14.45 3.80 -182.41 -0.69 -15.15 15 4 N -0.34 -13.20 11.73 -56.98 -0.67 -13.87 15 5 C 0.06 2.04 12.02 85.25 1.02 3.06 15 6 C -0.28 -11.61 9.70 22.01 0.21 -11.40 15 7 C 0.11 4.88 5.84 41.27 0.24 5.12 15 8 C 0.10 4.98 2.46 -12.29 -0.03 4.95 15 9 H 0.02 0.86 7.19 -2.39 -0.02 0.84 15 10 C -0.12 -5.62 8.95 71.98 0.64 -4.98 15 11 C -0.52 -28.01 8.25 25.60 0.21 -27.79 15 12 H 0.06 3.24 6.84 -2.91 -0.02 3.22 15 13 C 0.02 0.96 5.30 84.66 0.45 1.41 15 14 N -0.92 -50.43 11.32 21.45 0.24 -50.19 15 15 Si 0.96 42.18 29.54 68.60 2.03 44.21 15 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 19 H 0.10 3.06 7.54 -2.91 -0.02 3.04 15 20 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 21 H 0.16 5.28 7.21 -2.91 -0.02 5.26 15 22 H 0.22 5.42 8.06 -2.91 -0.02 5.40 15 23 H 0.15 5.93 7.66 -2.91 -0.02 5.90 15 24 H 0.07 3.70 6.07 -2.39 -0.01 3.69 15 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 26 H 0.03 1.55 8.14 -2.39 -0.02 1.53 15 27 H 0.26 13.79 8.31 -92.71 -0.77 13.02 15 Total: -1.00 -60.65 238.26 6.64 -54.01 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.15 Total: 12.47 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.58 Total: -31.48 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.12 Total: -79.21 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -60.65 6.64 -54.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158591.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.195 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds