Wall clock time and date at job start Mon Mar 30 2020 01:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37910 * 119.57029 * 2 1 4 4 C 1.39581 * 119.05251 * 179.75015 * 3 2 1 5 5 N 1.38967 * 120.87702 * 180.25427 * 4 3 2 6 6 C 1.36875 * 120.00567 * 0.22397 * 5 4 3 7 7 H 1.08001 * 119.99397 * 0.02562 * 6 5 4 8 8 C 1.38828 * 120.00386 * 179.97438 * 6 5 4 9 9 N 1.31562 * 120.00151 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00221 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46828 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46870 * 120.00601 * 10 8 6 13 13 H 1.48500 * 109.47403 * 240.00421 * 10 8 6 14 14 C 1.39605 * 118.24016 * 0.47212 * 4 3 2 15 15 C 1.50703 * 120.47220 * 179.80636 * 14 4 3 16 16 C 1.37874 * 119.05712 * 359.53063 * 14 4 3 17 17 N 1.31980 * 119.57501 * 179.97438 * 2 1 3 18 18 H 1.08998 * 109.46869 * 270.01469 * 1 2 3 19 19 H 1.08996 * 109.47358 * 30.01770 * 1 2 3 20 20 H 1.09005 * 109.46933 * 150.02244 * 1 2 3 21 21 H 1.08001 * 120.47758 * 0.02562 * 3 2 1 22 22 H 0.97002 * 120.00148 * 180.21815 * 5 4 3 23 23 H 0.96998 * 120.00198 * 179.97438 * 9 8 6 24 24 H 1.09002 * 109.47152 * 269.72043 * 15 14 4 25 25 H 1.09001 * 109.46980 * 149.72143 * 15 14 4 26 26 H 1.09004 * 109.47113 * 29.72124 * 15 14 4 27 27 H 1.08002 * 119.57572 * 180.25470 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1876 1.1995 0.0000 4 6 3.5833 1.1869 0.0053 5 7 4.3072 2.3731 0.0108 6 6 3.6520 3.5748 0.0157 7 1 2.5723 3.6011 0.0157 8 6 4.3752 4.7598 0.0217 9 7 5.6904 4.7278 0.0222 10 14 3.4809 6.3998 0.0276 11 1 2.0148 6.1641 0.0254 12 1 3.8572 7.1644 1.2438 13 1 3.8600 7.1748 -1.1811 14 6 4.2328 -0.0489 0.0003 15 6 5.7380 -0.1212 0.0013 16 6 3.4774 -1.2023 0.0002 17 7 2.1584 -1.1478 0.0005 18 1 -0.3633 0.0003 1.0277 19 1 -0.3634 0.8898 -0.5141 20 1 -0.3633 -0.8902 -0.5135 21 1 1.6483 2.1352 0.0004 22 1 5.2769 2.3495 0.0113 23 1 6.1957 5.5558 0.0260 24 1 6.1016 -0.1390 -1.0261 25 1 6.0579 -1.0274 0.5157 26 1 6.1433 0.7506 0.5151 27 1 3.9712 -2.1629 0.0006 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163832.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:07 Heat of formation + Delta-G solvation = 1.127221 kcal Electronic energy + Delta-G solvation = -11505.241855 eV Core-core repulsion = 9454.449864 eV Total energy + Delta-G solvation = -2050.791991 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.89002 -37.48951 -34.71825 -33.67534 -31.28928 -29.74825 -26.94330 -26.11354 -23.33600 -21.77455 -19.85416 -18.03990 -17.08775 -16.18330 -15.64997 -15.43191 -15.33796 -14.81923 -14.10833 -13.71575 -13.44744 -13.38907 -13.24069 -12.86490 -12.79572 -12.43565 -12.34746 -12.09130 -11.79059 -10.83321 -10.02278 -9.42458 -8.86878 -8.53911 -5.82519 0.58335 0.90924 1.40249 1.47643 1.53763 2.24082 2.91758 3.32882 3.36314 3.80622 4.13968 4.31525 4.52450 4.63969 4.77967 4.85923 4.91067 4.93991 5.11716 5.19675 5.26143 5.38172 5.51186 5.66152 5.80960 6.26299 6.76032 7.39935 7.54304 7.56784 8.64453 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040844 B = 0.011607 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.370045 B = 2411.704724 C = 3076.625872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.145 3.855 3 C -0.289 4.289 4 C 0.210 3.790 5 N -0.568 5.568 6 C -0.325 4.325 7 H 0.103 0.897 8 C -0.026 4.026 9 N -0.928 5.928 10 Si 0.999 3.001 11 H -0.258 1.258 12 H -0.277 1.277 13 H -0.276 1.276 14 C -0.272 4.272 15 C -0.084 4.084 16 C 0.134 3.866 17 N -0.579 5.579 18 H 0.082 0.918 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.116 0.884 22 H 0.396 0.604 23 H 0.277 0.723 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 -4.714 0.008 6.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.010 3.990 3 C -0.317 4.317 4 C 0.085 3.915 5 N -0.174 5.174 6 C -0.455 4.455 7 H 0.121 0.879 8 C -0.225 4.225 9 N -0.567 5.567 10 Si 0.823 3.177 11 H -0.182 1.182 12 H -0.202 1.202 13 H -0.202 1.202 14 C -0.281 4.281 15 C -0.141 4.141 16 C -0.021 4.021 17 N -0.296 5.296 18 H 0.100 0.900 19 H 0.096 0.904 20 H 0.097 0.903 21 H 0.134 0.866 22 H 0.231 0.769 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.542 -5.048 0.010 6.791 hybrid contribution 0.967 1.817 0.014 2.058 sum -3.575 -3.232 0.024 4.819 Atomic orbital electron populations 1.20643 0.87574 1.03366 1.03248 1.21259 0.97647 0.87643 0.92414 1.21262 0.92774 0.99252 1.18425 1.18355 0.92188 0.86801 0.94154 1.40992 1.07853 1.02345 1.66258 1.20070 0.93629 0.83275 1.48538 0.87904 1.26200 0.96330 1.03216 0.96780 1.69773 1.06567 1.30138 1.50215 0.84751 0.78600 0.76468 0.77916 1.18183 1.20213 1.20198 1.20370 0.97782 0.92312 1.17677 1.20342 0.90100 1.02110 1.01563 1.22445 0.89244 0.97224 0.93154 1.67512 1.09971 1.28735 1.23388 0.89958 0.90372 0.90293 0.86575 0.76897 0.91390 0.92056 0.89459 0.94252 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 10.17 71.24 0.72 -1.97 15 2 C 0.15 5.75 6.78 42.46 0.29 6.04 15 3 C -0.29 -12.91 9.00 22.52 0.20 -12.70 15 4 C 0.21 9.91 6.64 38.67 0.26 10.16 15 5 N -0.57 -29.10 5.35 -183.71 -0.98 -30.08 15 6 C -0.33 -17.17 9.58 84.05 0.80 -16.37 15 7 H 0.10 5.25 5.76 -2.91 -0.02 5.23 15 8 C -0.03 -1.34 5.50 84.87 0.47 -0.87 15 9 N -0.93 -50.44 13.05 21.65 0.28 -50.16 15 10 Si 1.00 40.73 29.55 68.60 2.03 42.76 15 11 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 12 H -0.28 -11.06 7.11 99.48 0.71 -10.35 15 13 H -0.28 -11.05 7.11 99.48 0.71 -10.34 15 14 C -0.27 -11.10 5.92 -19.62 -0.12 -11.22 15 15 C -0.08 -2.88 9.64 71.24 0.69 -2.19 15 16 C 0.13 5.03 10.85 84.58 0.92 5.94 15 17 N -0.58 -23.14 10.27 -184.20 -1.89 -25.03 15 18 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 19 H 0.08 2.09 8.07 -2.39 -0.02 2.08 15 20 H 0.08 2.13 8.14 -2.38 -0.02 2.11 15 21 H 0.12 5.17 6.09 -2.91 -0.02 5.15 15 22 H 0.40 20.56 6.03 -92.71 -0.56 20.00 15 23 H 0.28 14.10 8.31 -92.71 -0.77 13.33 15 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.09 2.41 8.09 -2.39 -0.02 2.39 15 26 H 0.04 1.47 6.65 -2.38 -0.02 1.45 15 27 H 0.17 4.99 8.06 -2.91 -0.02 4.97 15 Total: -1.00 -59.11 235.11 4.29 -54.82 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.62 Total: 30.87 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.23 Total: -23.18 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -2.59 Total: -105.27 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -59.11 4.29 -54.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163832.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.948 kcal (2) G-P(sol) polarization free energy of solvation -59.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds