Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39996 * 126.03294 * 2 1 4 4 C 1.30730 * 108.21862 * 179.97438 * 3 2 1 5 5 C 1.40175 * 108.23798 * 359.97438 * 4 3 2 6 6 C 1.35132 * 107.86025 * 359.97438 * 5 4 3 7 7 C 1.51327 * 110.30671 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.33556 * 258.04226 * 7 6 5 9 9 C 1.50696 * 110.33758 * 135.79738 * 7 6 5 10 10 H 1.07993 * 119.99960 * 359.97438 * 9 7 6 11 11 C 1.37881 * 119.99561 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00257 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99617 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47209 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47163 * 119.99982 * 13 11 9 16 16 H 1.48504 * 109.46975 * 239.99829 * 13 11 9 17 17 C 1.54442 * 104.99107 * 16.91374 * 7 6 5 18 18 C 1.51365 * 141.89169 * 179.67125 * 5 4 3 19 19 H 1.09001 * 109.47278 * 89.98025 * 1 2 3 20 20 H 1.09005 * 109.47349 * 209.97680 * 1 2 3 21 21 H 1.09003 * 109.46954 * 329.97979 * 1 2 3 22 22 H 1.08002 * 125.88401 * 180.02562 * 4 3 2 23 23 H 0.97003 * 120.00206 * 180.02562 * 12 11 9 24 24 H 1.08997 * 110.92296 * 92.46723 * 17 7 6 25 25 H 1.09006 * 110.92373 * 216.07686 * 17 7 6 26 26 H 1.08993 * 110.33619 * 281.94397 * 18 5 4 27 27 H 1.09003 * 110.33003 * 44.17540 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2885 1.1321 0.0000 4 6 3.5331 0.7322 0.0006 5 6 3.5435 -0.6695 0.0015 6 6 2.2604 -1.0935 0.0021 7 6 2.2070 -2.6058 0.0038 8 1 1.9819 -2.9780 -0.9956 9 6 1.1763 -3.0924 0.9896 10 1 0.6053 -2.3818 1.5687 11 6 0.9629 -4.4448 1.1528 12 7 1.6586 -5.3100 0.4478 13 14 -0.3142 -5.0479 2.3752 14 1 -0.9547 -3.8831 3.0372 15 1 -1.3466 -5.8416 1.6614 16 1 0.3438 -5.8986 3.3993 17 6 3.6194 -3.0549 0.4382 18 6 4.4864 -1.8536 -0.0028 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3633 0.8898 0.5142 22 1 4.4035 1.3716 0.0011 23 1 1.5082 -6.2614 0.5624 24 1 3.6673 -3.1985 1.5176 25 1 3.9181 -3.9622 -0.0870 26 1 4.8823 -2.0189 -1.0048 27 1 5.2997 -1.6927 0.7049 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261204649.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = 76.137662 kcal Electronic energy + Delta-G solvation = -11888.054186 eV Core-core repulsion = 9840.514892 eV Total energy + Delta-G solvation = -2047.539294 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -40.64201 -35.56321 -32.87720 -31.92161 -27.80554 -27.38870 -25.62457 -23.42922 -20.71323 -19.39980 -18.50972 -16.61111 -15.62699 -14.63920 -14.41778 -13.60731 -13.44447 -12.46310 -12.28293 -12.05817 -11.79698 -11.65327 -11.30229 -11.00801 -10.61276 -10.58269 -9.92841 -9.86464 -9.49433 -9.12900 -8.55387 -8.33957 -7.30597 -6.14512 -4.19790 2.75854 3.21994 3.23853 3.31111 3.33948 3.61812 4.34034 5.17599 5.31123 5.51115 5.74834 5.78432 5.92123 6.05539 6.28340 6.35389 6.45511 6.70352 7.01390 7.15211 7.19771 7.44972 7.57020 7.64543 7.82370 7.94191 8.21314 8.52943 8.80164 9.45093 10.94088 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043328 B = 0.013784 C = 0.011095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.084220 B = 2030.781490 C = 2523.101531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.363 5.363 3 N -0.326 5.326 4 C 0.060 3.940 5 C -0.297 4.297 6 C 0.112 3.888 7 C 0.112 3.888 8 H 0.051 0.949 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.067 3.933 12 N -0.884 5.884 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.086 4.086 18 C -0.042 4.042 19 H 0.063 0.937 20 H 0.098 0.902 21 H 0.074 0.926 22 H 0.170 0.830 23 H 0.263 0.737 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 5.081 -0.682 5.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.144 5.144 3 N -0.147 5.147 4 C -0.125 4.125 5 C -0.308 4.308 6 C -0.017 4.017 7 C 0.092 3.908 8 H 0.069 0.931 9 C -0.559 4.559 10 H 0.075 0.925 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.125 4.125 18 C -0.081 4.081 19 H 0.081 0.919 20 H 0.116 0.884 21 H 0.093 0.907 22 H 0.187 0.813 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.046 5.925 -0.715 5.968 hybrid contribution -0.220 -0.947 0.669 1.180 sum -0.266 4.978 -0.047 4.985 Atomic orbital electron populations 1.21816 0.75240 1.04192 1.02493 1.47759 1.05822 1.02744 1.58066 1.77162 1.01157 1.08350 1.28063 1.23087 0.94767 0.93754 1.00893 1.21070 0.96378 0.93470 1.19833 1.22826 0.90196 0.94274 0.94392 1.18209 0.94915 0.79573 0.98145 0.93105 1.21019 1.20610 0.91676 1.22595 0.92532 1.24938 0.96038 0.96747 0.95823 1.69948 1.40195 1.01946 1.40075 0.86530 0.81411 0.78888 0.81178 1.19813 1.20881 1.20823 1.22315 0.94100 0.95321 1.00758 1.20531 0.96050 0.91918 0.99571 0.91852 0.88393 0.90724 0.81291 0.92744 0.92083 0.91067 0.92729 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 11.47 59.85 0.69 2.51 15 2 N -0.36 -7.83 4.02 -63.64 -0.26 -8.08 15 3 N -0.33 -6.88 12.57 30.67 0.39 -6.49 15 4 C 0.06 1.17 12.03 -17.29 -0.21 0.97 15 5 C -0.30 -6.37 6.90 -104.67 -0.72 -7.09 15 6 C 0.11 2.59 6.84 -81.90 -0.56 2.03 15 7 C 0.11 2.76 2.76 -91.86 -0.25 2.50 15 8 H 0.05 1.35 8.14 -51.93 -0.42 0.92 15 9 C -0.52 -13.67 8.09 -34.44 -0.28 -13.95 15 10 H 0.06 1.49 6.66 -52.49 -0.35 1.14 15 11 C 0.07 1.78 5.34 -17.82 -0.10 1.68 15 12 N -0.88 -24.07 12.55 55.43 0.70 -23.38 15 13 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 15 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 17 C -0.09 -1.97 5.82 -25.15 -0.15 -2.12 15 18 C -0.04 -0.84 6.79 -26.73 -0.18 -1.02 15 19 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 20 H 0.10 1.77 6.64 -51.93 -0.34 1.42 15 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.17 2.61 8.06 -52.49 -0.42 2.19 15 23 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 24 H 0.06 1.46 7.91 -51.93 -0.41 1.05 15 25 H 0.07 1.65 8.01 -51.93 -0.42 1.24 15 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 232.33 15.07 3.50 3.50 Total: -1.00 -29.03 232.33 -5.65 -34.67 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.19 Total: -1.12 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.76 Total: -14.49 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.83 Total: -37.95 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.03 -5.65 -34.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204649.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.810 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.00 seconds