Wall clock time and date at job start Mon Mar 30 2020 01:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48509 * 109.46673 * 269.99959 * 3 2 1 5 5 H 1.48494 * 109.47276 * 29.99851 * 3 2 1 6 6 H 1.48500 * 109.46852 * 150.00374 * 3 2 1 7 7 C 1.37878 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99930 * 185.13086 * 7 2 1 9 9 C 1.50706 * 120.00139 * 5.13934 * 7 2 1 10 10 H 1.08993 * 109.75044 * 25.50855 * 9 7 2 11 11 C 1.53442 * 109.71602 * 264.87462 * 9 7 2 12 12 C 1.53148 * 109.18746 * 191.77494 * 11 9 7 13 13 C 1.53245 * 109.55532 * 69.43889 * 12 11 9 14 14 N 1.46586 * 108.90841 * 309.34113 * 13 12 11 15 15 N 1.39398 * 127.75729 * 197.28125 * 14 13 12 16 16 C 1.31023 * 108.20597 * 179.97438 * 15 14 13 17 17 C 1.40063 * 108.25713 * 0.07272 * 16 15 14 18 18 C 1.34751 * 107.79810 * 0.02562 * 17 16 15 19 19 H 0.96998 * 119.99597 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.51587 * 71.85938 * 11 9 7 21 21 H 1.09004 * 109.52125 * 311.68790 * 11 9 7 22 22 H 1.09001 * 109.45949 * 309.41137 * 12 11 9 23 23 H 1.09004 * 109.44222 * 189.45728 * 12 11 9 24 24 H 1.08994 * 109.58618 * 69.21091 * 13 12 11 25 25 H 1.09000 * 109.58232 * 189.48183 * 13 12 11 26 26 H 1.08004 * 125.86885 * 180.02562 * 16 15 14 27 27 H 1.07995 * 126.09651 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0842 9 6 1.2556 -2.4967 -0.1158 10 1 0.3066 -2.3316 -0.6259 11 6 0.9982 -3.0725 1.2830 12 6 0.5075 -4.5171 1.1501 13 6 1.6543 -5.4049 0.6551 14 7 2.2529 -4.7893 -0.5330 15 7 3.0772 -5.3909 -1.4826 16 6 3.3916 -4.4906 -2.3810 17 6 2.7751 -3.2837 -2.0271 18 6 2.0839 -3.4923 -0.8894 19 1 -0.4849 0.8401 0.0004 20 1 0.2396 -2.4752 1.7888 21 1 1.9226 -3.0535 1.8604 22 1 -0.3161 -4.5568 0.4372 23 1 0.1647 -4.8746 2.1211 24 1 2.4078 -5.4984 1.4371 25 1 1.2684 -6.3919 0.4000 26 1 4.0189 -4.6512 -3.2454 27 1 2.8420 -2.3521 -2.5694 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261206352.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:36 Heat of formation + Delta-G solvation = 42.696219 kcal Electronic energy + Delta-G solvation = -11918.846014 eV Core-core repulsion = 9869.856590 eV Total energy + Delta-G solvation = -2048.989424 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.15936 -37.41142 -35.10722 -32.74853 -30.99943 -29.04859 -27.05553 -24.07967 -22.88695 -21.75228 -19.59853 -18.55288 -17.43672 -16.40735 -16.24910 -15.23758 -15.04723 -14.64269 -14.56442 -14.05821 -13.43095 -13.06245 -12.91052 -12.68666 -12.30560 -12.08670 -11.77298 -11.72789 -11.24263 -11.09390 -10.55200 -9.89941 -9.26594 -8.17839 -6.27406 1.15418 1.42848 1.44847 1.54352 1.80752 2.10584 2.43989 3.12749 3.66131 3.97970 4.17679 4.22148 4.33872 4.56033 4.71111 4.72258 4.93827 5.07484 5.08874 5.19116 5.39026 5.54188 5.74223 5.79489 5.97389 6.15783 6.39569 6.81801 7.00300 7.39578 8.90783 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.044069 B = 0.013379 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.213334 B = 2092.252277 C = 2544.301239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.047 0.953 9 C 0.091 3.909 10 H 0.045 0.955 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.387 5.387 15 N -0.340 5.340 16 C 0.041 3.959 17 C -0.297 4.297 18 C 0.104 3.896 19 H 0.266 0.734 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.212 0.788 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -6.582 0.904 6.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.071 3.929 10 H 0.063 0.937 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.012 3.988 14 N -0.171 5.171 15 N -0.161 5.161 16 C -0.144 4.144 17 C -0.326 4.326 18 C -0.023 4.023 19 H 0.075 0.925 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.228 0.772 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.939 -7.790 1.400 8.149 hybrid contribution 0.210 1.952 -0.395 2.003 sum 2.149 -5.838 1.004 6.302 Atomic orbital electron populations 1.70020 1.07190 1.27818 1.50779 1.25680 0.95634 1.02338 0.94199 0.85580 0.78659 0.79185 0.78414 1.19953 1.20649 1.19496 1.21075 0.92914 0.90744 1.50727 0.93438 1.17759 0.93794 0.89864 0.91461 0.93731 1.21681 0.99929 0.94511 0.98355 1.21975 0.96451 0.94930 1.03161 1.21958 0.95799 0.97585 0.83439 1.48981 1.39208 1.07566 1.21370 1.76881 1.13607 1.23327 1.02297 1.24312 1.00250 0.90604 0.99242 1.21174 1.09496 1.00414 1.01485 1.22257 0.98086 0.85873 0.96107 0.92543 0.92754 0.93496 0.92062 0.86618 0.89515 0.87819 0.77156 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.78 12.86 21.45 0.28 -51.50 15 2 C 0.02 1.14 5.45 84.65 0.46 1.60 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.82 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 7 C -0.52 -27.95 7.95 25.60 0.20 -27.75 15 8 H 0.05 2.62 7.82 -2.91 -0.02 2.60 15 9 C 0.09 4.54 2.55 -12.08 -0.03 4.51 15 10 H 0.04 2.49 7.41 -2.39 -0.02 2.47 15 11 C -0.11 -4.48 5.28 30.79 0.16 -4.32 15 12 C -0.13 -4.04 5.93 30.73 0.18 -3.86 15 13 C 0.13 4.17 7.27 86.44 0.63 4.79 15 14 N -0.39 -15.81 4.04 -333.91 -1.35 -17.16 15 15 N -0.34 -13.66 12.61 -56.79 -0.72 -14.37 15 16 C 0.04 1.54 12.03 85.26 1.03 2.56 15 17 C -0.30 -13.04 10.30 21.91 0.23 -12.82 15 18 C 0.10 4.81 6.12 41.23 0.25 5.06 15 19 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 20 H 0.05 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.05 1.97 8.08 -2.39 -0.02 1.95 15 22 H 0.06 2.04 8.12 -2.39 -0.02 2.02 15 23 H 0.12 2.76 8.14 -2.38 -0.02 2.74 15 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 25 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.21 5.83 8.06 -2.91 -0.02 5.81 15 27 H 0.14 5.96 8.06 -2.91 -0.02 5.94 15 Total: -1.00 -62.44 231.69 4.49 -57.94 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.15 Total: 10.48 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.11 Total: -30.21 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.79 Total: -83.03 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -62.44 4.49 -57.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206352.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.640 kcal (2) G-P(sol) polarization free energy of solvation -62.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds