Wall clock time and date at job start Mon Mar 30 2020 01:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86799 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47118 * 274.98267 * 3 2 1 5 5 H 1.48504 * 109.47431 * 34.97952 * 3 2 1 6 6 H 1.48497 * 109.47479 * 154.98236 * 3 2 1 7 7 C 1.40237 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00159 * 186.04022 * 7 2 1 9 9 C 1.39998 * 119.99670 * 6.04610 * 7 2 1 10 10 N 1.32974 * 125.96446 * 354.17909 * 9 7 2 11 11 C 1.32766 * 109.22513 * 180.02562 * 10 9 7 12 12 C 1.36222 * 108.61642 * 359.73665 * 11 10 9 13 13 N 1.36416 * 107.19404 * 0.42307 * 12 11 10 14 14 C 1.46495 * 126.55609 * 179.83925 * 13 12 11 15 15 C 1.53783 * 113.61137 * 59.69313 * 14 13 12 16 16 C 1.53779 * 87.08218 * 220.01831 * 15 14 13 17 17 C 1.53777 * 87.17348 * 25.38963 * 16 15 14 18 18 H 0.97003 * 120.00182 * 0.02562 * 1 2 3 19 19 H 1.08001 * 125.68688 * 180.02562 * 11 10 9 20 20 H 1.07998 * 126.40170 * 180.26776 * 12 11 10 21 21 H 1.09003 * 112.85397 * 190.88464 * 14 13 12 22 22 H 1.08998 * 113.61650 * 105.47078 * 15 14 13 23 23 H 1.09001 * 113.61419 * 334.56513 * 15 14 13 24 24 H 1.08998 * 113.61437 * 139.98067 * 16 15 14 25 25 H 1.09002 * 113.61632 * 270.80104 * 16 15 14 26 26 H 1.09002 * 113.62024 * 89.15554 * 17 16 15 27 27 H 1.09003 * 113.61658 * 220.06023 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4949 2.6201 0.8026 6 1 3.5871 1.4122 0.5921 7 6 2.0081 -1.2145 0.0005 8 1 3.0836 -1.2170 0.0990 9 6 1.3140 -2.4236 -0.1266 10 7 -0.0079 -2.5669 -0.1456 11 6 -0.3063 -3.8537 -0.2790 12 6 0.8540 -4.5635 -0.3543 13 7 1.8803 -3.6706 -0.2531 14 6 3.3119 -3.9801 -0.2802 15 6 3.7685 -4.6702 -1.5764 16 6 4.6641 -5.5574 -0.6957 17 6 3.6761 -5.2852 0.4508 18 1 -0.4850 0.8401 -0.0004 19 1 -1.3026 -4.2679 -0.3252 20 1 0.9443 -5.6335 -0.4697 21 1 3.9340 -3.1317 0.0052 22 1 4.3261 -4.0158 -2.2465 23 1 2.9738 -5.2182 -2.0826 24 1 4.6905 -6.6005 -1.0110 25 1 5.6571 -5.1418 -0.5243 26 1 2.8560 -6.0015 0.4999 27 1 4.1591 -5.1266 1.4150 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208735.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:56 Heat of formation + Delta-G solvation = 54.680875 kcal Electronic energy + Delta-G solvation = -11789.339422 eV Core-core repulsion = 9740.869692 eV Total energy + Delta-G solvation = -2048.469730 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.94072 -39.08326 -35.25220 -32.60535 -30.59081 -26.97600 -26.57722 -25.72628 -22.04366 -21.62975 -19.69309 -18.91683 -17.63117 -16.47485 -16.25640 -15.34818 -15.05248 -14.49902 -14.20815 -13.44421 -13.34990 -13.14080 -13.03133 -12.78256 -12.36874 -12.15142 -11.87686 -11.49469 -11.31594 -11.08136 -9.76595 -9.72844 -9.00865 -8.32402 -6.27368 1.36142 1.42518 1.57965 1.82085 2.26842 2.68245 2.77633 3.56057 3.60203 3.77286 3.92015 4.03683 4.48161 4.57538 4.74330 4.76441 4.79773 4.99405 5.03579 5.08198 5.21583 5.34381 5.48714 5.74254 6.24181 6.31291 6.70590 7.02569 7.43368 8.31662 8.64888 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041382 B = 0.012965 C = 0.010361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.459577 B = 2159.066599 C = 2701.840359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.030 3.970 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.495 4.495 8 H 0.086 0.914 9 C 0.334 3.666 10 N -0.567 5.567 11 C -0.065 4.065 12 C -0.141 4.141 13 N -0.492 5.492 14 C 0.102 3.898 15 C -0.146 4.146 16 C -0.113 4.113 17 C -0.141 4.141 18 H 0.275 0.725 19 H 0.150 0.850 20 H 0.172 0.828 21 H 0.103 0.897 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 -6.343 -1.027 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.534 4.534 8 H 0.104 0.896 9 C 0.089 3.911 10 N -0.289 5.289 11 C -0.216 4.216 12 C -0.273 4.273 13 N -0.180 5.180 14 C -0.002 4.002 15 C -0.184 4.184 16 C -0.150 4.150 17 C -0.179 4.179 18 H 0.085 0.915 19 H 0.167 0.833 20 H 0.189 0.811 21 H 0.121 0.879 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.146 -5.707 -0.958 10.823 hybrid contribution 0.233 0.025 -0.068 0.244 sum 9.379 -5.682 -1.026 11.014 Atomic orbital electron populations 1.70176 1.09041 1.28754 1.34285 1.26785 0.95568 1.04105 0.92371 0.85049 0.78906 0.75669 0.79023 1.19059 1.19636 1.17516 1.18501 0.94392 0.88655 1.51869 0.89600 1.20630 0.87818 0.85670 0.97013 1.71140 1.12085 1.16806 1.28853 1.22593 0.97831 0.91874 1.09294 1.22220 0.87743 0.95806 1.21488 1.45665 1.05914 1.06652 1.59756 1.23054 0.79324 0.98257 0.99567 1.23366 0.99761 0.99027 0.96296 1.22637 0.97501 1.00782 0.94114 1.23369 0.99862 0.95427 0.99221 0.91504 0.83263 0.81134 0.87872 0.90811 0.90697 0.88947 0.88060 0.89974 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.46 11.92 21.88 0.26 -47.20 15 2 C 0.03 1.66 5.49 85.35 0.47 2.13 15 3 Si 0.99 40.60 29.57 68.60 2.03 42.63 15 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.25 -9.60 7.11 99.48 0.71 -8.90 15 7 C -0.49 -28.26 9.05 23.18 0.21 -28.05 15 8 H 0.09 4.48 6.89 -2.91 -0.02 4.46 15 9 C 0.33 19.68 7.43 133.59 0.99 20.68 15 10 N -0.57 -35.29 9.43 -194.16 -1.83 -37.12 15 11 C -0.07 -3.46 11.85 84.08 1.00 -2.46 15 12 C -0.14 -6.57 10.40 83.51 0.87 -5.70 15 13 N -0.49 -23.89 3.00 -495.35 -1.48 -25.37 15 14 C 0.10 3.77 4.50 45.58 0.21 3.98 15 15 C -0.15 -4.32 7.77 31.12 0.24 -4.08 15 16 C -0.11 -2.45 8.08 31.12 0.25 -2.20 15 17 C -0.14 -3.96 7.66 31.18 0.24 -3.72 15 18 H 0.27 14.87 8.29 -92.71 -0.77 14.11 15 19 H 0.15 7.01 8.06 -2.91 -0.02 6.99 15 20 H 0.17 6.40 7.53 -2.91 -0.02 6.38 15 21 H 0.10 3.91 7.04 -2.39 -0.02 3.90 15 22 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.07 2.35 7.91 -2.39 -0.02 2.33 15 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.10 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.08 2.37 7.00 -2.39 -0.02 2.35 15 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -71.72 232.74 4.60 -67.12 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.16 Total: 19.39 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.47 Total: -19.43 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -3.05 Total: -109.70 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -71.72 4.60 -67.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208735.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.799 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds