Wall clock time and date at job start Mon Mar 30 2020 01:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99700 * 2 1 4 4 H 1.48506 * 109.47037 * 264.80448 * 3 2 1 5 5 H 1.48497 * 109.47150 * 24.80227 * 3 2 1 6 6 H 1.48498 * 109.47200 * 144.80338 * 3 2 1 7 7 C 1.37877 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99858 * 5.14915 * 7 2 1 9 9 C 1.50704 * 119.99651 * 185.14547 * 7 2 1 10 10 H 1.08994 * 109.58391 * 335.38351 * 9 7 2 11 11 C 1.53248 * 109.58012 * 95.79098 * 9 7 2 12 12 C 1.53146 * 109.55205 * 170.36930 * 11 9 7 13 13 C 1.53316 * 109.30862 * 290.68669 * 12 11 9 14 14 C 1.50873 * 108.24381 * 48.26671 * 13 12 11 15 15 C 1.34745 * 127.76991 * 164.32118 * 14 13 12 16 16 C 1.40060 * 107.79787 * 180.33621 * 15 14 13 17 17 N 1.31021 * 108.25435 * 359.97438 * 16 15 14 18 18 N 1.35296 * 124.31584 * 344.64016 * 14 13 12 19 19 H 0.96999 * 120.00481 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.45814 * 290.39612 * 11 9 7 21 21 H 1.09008 * 109.45678 * 50.36108 * 11 9 7 22 22 H 1.08999 * 109.52200 * 50.46729 * 12 11 9 23 23 H 1.09002 * 109.52101 * 170.58530 * 12 11 9 24 24 H 1.09002 * 109.61459 * 288.62269 * 13 12 11 25 25 H 1.09000 * 109.77500 * 168.00340 * 13 12 11 26 26 H 1.08000 * 126.09915 * 0.30829 * 15 14 13 27 27 H 1.08007 * 125.86791 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6064 1.9831 -1.3944 5 1 1.3959 2.6819 0.5873 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1941 0.0005 8 1 1.4678 -2.1274 -0.0830 9 6 3.5070 -1.1965 0.1176 10 1 3.9028 -0.2455 -0.2386 11 6 3.9078 -1.4067 1.5817 12 6 5.4173 -1.6490 1.6703 13 6 5.7484 -3.0146 1.0571 14 6 5.0564 -3.1123 -0.2800 15 6 5.2975 -3.9920 -1.2718 16 6 4.4206 -3.7012 -2.3245 17 7 3.6794 -2.6802 -1.9712 18 7 4.0606 -2.2908 -0.6853 19 1 -0.4851 0.8400 -0.0004 20 1 3.6477 -0.5202 2.1602 21 1 3.3775 -2.2705 1.9829 22 1 5.9443 -0.8690 1.1206 23 1 5.7283 -1.6319 2.7148 24 1 5.3915 -3.8072 1.7147 25 1 6.8260 -3.1062 0.9210 26 1 6.0355 -4.7803 -1.2576 27 1 4.3651 -4.2280 -3.2657 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:19 Heat of formation + Delta-G solvation = 63.272203 kcal Electronic energy + Delta-G solvation = -11991.750351 eV Core-core repulsion = 9943.653168 eV Total energy + Delta-G solvation = -2048.097182 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.59160 -35.96132 -33.14637 -31.40624 -29.45990 -27.74435 -25.43868 -22.18873 -21.44744 -20.05889 -18.12677 -17.13660 -15.85478 -14.66936 -14.27233 -13.75599 -13.50601 -13.42044 -12.87862 -12.69051 -12.16686 -11.55976 -11.39760 -10.99493 -10.64964 -10.44699 -10.17150 -10.04150 -9.77118 -9.41027 -8.78914 -8.25192 -7.66550 -6.27893 -4.30556 2.80837 3.13890 3.21508 3.24989 3.58882 3.60496 4.21940 4.95666 5.13659 5.24874 5.37710 5.57014 5.77672 5.95292 6.07586 6.12400 6.19613 6.29664 6.35800 6.57301 6.66049 6.82610 6.98443 7.28733 7.54245 7.97673 8.34244 8.70493 8.84385 9.30309 10.84342 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041726 B = 0.015083 C = 0.012596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.877696 B = 1855.896616 C = 2222.453821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.082 3.918 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.249 3.751 10 H 0.048 0.952 11 C -0.125 4.125 12 C -0.132 4.132 13 C -0.052 4.052 14 C 0.062 3.938 15 C -0.293 4.293 16 C 0.006 3.994 17 N -0.269 5.269 18 N -0.325 5.325 19 H 0.269 0.731 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.132 0.868 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -2.993 2.630 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.123 4.123 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.150 3.850 10 H 0.066 0.934 11 C -0.164 4.164 12 C -0.170 4.170 13 C -0.090 4.090 14 C -0.068 4.068 15 C -0.323 4.323 16 C -0.178 4.178 17 N -0.091 5.091 18 N -0.108 5.108 19 H 0.079 0.921 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.747 -1.929 2.341 10.208 hybrid contribution 0.964 0.251 0.100 1.001 sum 10.711 -1.677 2.441 11.113 Atomic orbital electron populations 1.69867 1.06218 1.27497 1.48111 1.24968 0.94853 0.98828 0.93666 0.86937 0.80187 0.83687 0.79321 1.19595 1.20724 1.18880 1.20861 0.87298 0.95549 1.51402 0.89982 1.19672 0.95891 0.83485 0.85969 0.93416 1.22178 0.93391 1.03077 0.97764 1.21795 0.98100 0.96520 1.00568 1.20300 0.99145 0.98454 0.91134 1.21083 0.93864 0.94672 0.97191 1.20840 1.09010 1.06601 0.95827 1.23762 0.96541 0.97566 0.99958 1.77398 1.21421 1.14932 0.95337 1.49845 1.24738 1.24938 1.11237 0.92055 0.90432 0.91088 0.92141 0.91442 0.90174 0.90217 0.85030 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.96 55.43 0.77 -25.63 15 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 15 3 Si 0.87 20.78 27.00 -169.99 -4.59 16.19 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 6 H -0.26 -5.82 6.80 56.52 0.38 -5.43 15 7 C -0.51 -14.54 8.89 -34.44 -0.31 -14.85 15 8 H 0.08 2.63 8.06 -52.49 -0.42 2.20 15 9 C 0.25 6.00 2.81 -68.91 -0.19 5.81 15 10 H 0.05 1.18 5.27 -51.93 -0.27 0.90 15 11 C -0.12 -2.48 5.23 -26.53 -0.14 -2.62 15 12 C -0.13 -2.08 5.96 -26.49 -0.16 -2.24 15 13 C -0.05 -0.79 6.29 -27.64 -0.17 -0.96 15 14 C 0.06 1.22 6.59 -82.22 -0.54 0.68 15 15 C -0.29 -5.40 10.76 -40.14 -0.43 -5.83 15 16 C 0.01 0.13 12.03 -17.21 -0.21 -0.08 15 17 N -0.27 -6.57 12.28 30.70 0.38 -6.20 15 18 N -0.32 -7.67 3.77 -51.63 -0.19 -7.86 15 19 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 20 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 21 H 0.07 1.44 8.09 -51.92 -0.42 1.02 15 22 H 0.06 0.96 8.12 -51.93 -0.42 0.54 15 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.13 1.97 8.06 -52.49 -0.42 1.55 15 27 H 0.17 2.67 8.06 -52.48 -0.42 2.25 15 LS Contribution 228.59 15.07 3.44 3.44 Total: -1.00 -31.58 228.59 -5.66 -37.24 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.23 Total: 0.68 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.25 Total: -17.87 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.96 Total: -39.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.59 Total: 16.19 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.58 -5.66 -37.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.516 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds