Wall clock time and date at job start Mon Mar 30 2020 01:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99700 * 2 1 4 4 H 1.48506 * 109.47037 * 264.80448 * 3 2 1 5 5 H 1.48497 * 109.47150 * 24.80227 * 3 2 1 6 6 H 1.48498 * 109.47200 * 144.80338 * 3 2 1 7 7 C 1.37877 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99858 * 5.14915 * 7 2 1 9 9 C 1.50704 * 119.99651 * 185.14547 * 7 2 1 10 10 H 1.08994 * 109.58391 * 335.38351 * 9 7 2 11 11 C 1.53248 * 109.58012 * 95.79098 * 9 7 2 12 12 C 1.53146 * 109.55205 * 170.36930 * 11 9 7 13 13 C 1.53316 * 109.30862 * 290.68669 * 12 11 9 14 14 C 1.50873 * 108.24381 * 48.26671 * 13 12 11 15 15 C 1.34745 * 127.76991 * 164.32118 * 14 13 12 16 16 C 1.40060 * 107.79787 * 180.33621 * 15 14 13 17 17 N 1.31021 * 108.25435 * 359.97438 * 16 15 14 18 18 N 1.35296 * 124.31584 * 344.64016 * 14 13 12 19 19 H 0.96999 * 120.00481 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.45814 * 290.39612 * 11 9 7 21 21 H 1.09008 * 109.45678 * 50.36108 * 11 9 7 22 22 H 1.08999 * 109.52200 * 50.46729 * 12 11 9 23 23 H 1.09002 * 109.52101 * 170.58530 * 12 11 9 24 24 H 1.09002 * 109.61459 * 288.62269 * 13 12 11 25 25 H 1.09000 * 109.77500 * 168.00340 * 13 12 11 26 26 H 1.08000 * 126.09915 * 0.30829 * 15 14 13 27 27 H 1.08007 * 125.86791 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6064 1.9831 -1.3944 5 1 1.3959 2.6819 0.5873 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1941 0.0005 8 1 1.4678 -2.1274 -0.0830 9 6 3.5070 -1.1965 0.1176 10 1 3.9028 -0.2455 -0.2386 11 6 3.9078 -1.4067 1.5817 12 6 5.4173 -1.6490 1.6703 13 6 5.7484 -3.0146 1.0571 14 6 5.0564 -3.1123 -0.2800 15 6 5.2975 -3.9920 -1.2718 16 6 4.4206 -3.7012 -2.3245 17 7 3.6794 -2.6802 -1.9712 18 7 4.0606 -2.2908 -0.6853 19 1 -0.4851 0.8400 -0.0004 20 1 3.6477 -0.5202 2.1602 21 1 3.3775 -2.2705 1.9829 22 1 5.9443 -0.8690 1.1206 23 1 5.7283 -1.6319 2.7148 24 1 5.3915 -3.8072 1.7147 25 1 6.8260 -3.1062 0.9210 26 1 6.0355 -4.7803 -1.2576 27 1 4.3651 -4.2280 -3.2657 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:19 Heat of formation + Delta-G solvation = 41.401358 kcal Electronic energy + Delta-G solvation = -11992.698742 eV Core-core repulsion = 9943.653168 eV Total energy + Delta-G solvation = -2049.045573 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16070 -37.52986 -35.02904 -33.17099 -31.03542 -29.42172 -27.17228 -23.90473 -22.91946 -21.66043 -19.75364 -19.15909 -17.52247 -16.39272 -15.92373 -15.16648 -15.03530 -14.91835 -14.65943 -14.32265 -13.79457 -13.16079 -12.98583 -12.80479 -12.26429 -11.94879 -11.73614 -11.71035 -11.60029 -11.14308 -10.88313 -9.93134 -9.24106 -8.44684 -6.53314 1.22735 1.26701 1.29585 1.38332 1.97037 2.10935 2.21028 2.93142 3.78226 3.93823 4.05813 4.08046 4.29925 4.44665 4.65796 4.85310 4.92879 4.94929 4.96835 5.09461 5.24092 5.25793 5.45755 5.46926 5.98111 6.05720 6.48578 6.53938 7.08157 7.19265 8.72491 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041726 B = 0.015083 C = 0.012596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.877696 B = 1855.896616 C = 2222.453821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.022 3.978 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.230 1.230 7 C -0.521 4.521 8 H 0.022 0.978 9 C 0.249 3.751 10 H 0.043 0.957 11 C -0.122 4.122 12 C -0.124 4.124 13 C -0.050 4.050 14 C 0.056 3.944 15 C -0.290 4.290 16 C 0.011 3.989 17 N -0.344 5.344 18 N -0.355 5.355 19 H 0.273 0.727 20 H 0.082 0.918 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.108 0.892 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.173 0.827 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.433 -3.024 3.725 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.152 1.152 7 C -0.559 4.559 8 H 0.040 0.960 9 C 0.149 3.851 10 H 0.061 0.939 11 C -0.162 4.162 12 C -0.162 4.162 13 C -0.088 4.088 14 C -0.073 4.073 15 C -0.320 4.320 16 C -0.173 4.173 17 N -0.166 5.166 18 N -0.138 5.138 19 H 0.082 0.918 20 H 0.101 0.899 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.137 0.863 26 H 0.191 0.809 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 13.240 -1.989 3.448 13.825 hybrid contribution -0.124 0.064 -0.323 0.352 sum 13.116 -1.925 3.125 13.620 Atomic orbital electron populations 1.70023 1.08296 1.28772 1.50215 1.25916 0.95695 1.03054 0.93105 0.85836 0.80087 0.78218 0.79487 1.20177 1.19617 1.15241 1.20942 0.90094 0.93352 1.51548 0.96004 1.19602 0.92786 0.84115 0.88602 0.93934 1.22074 0.96971 1.02838 0.94269 1.21773 0.94145 0.96949 1.03295 1.20553 1.00973 0.98650 0.88659 1.22022 0.92522 0.93448 0.99314 1.21343 1.09059 1.06976 0.94576 1.24464 0.95307 0.96036 1.01503 1.77317 1.24449 1.17879 0.96931 1.49602 1.26643 1.26183 1.11408 0.91800 0.89944 0.92405 0.91879 0.87349 0.88444 0.86287 0.80919 0.78122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.80 13.96 21.45 0.30 -58.50 15 2 C 0.02 1.30 5.47 84.65 0.46 1.76 15 3 Si 0.94 43.27 27.00 68.60 1.85 45.12 15 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.23 -9.19 6.80 99.48 0.68 -8.51 15 7 C -0.52 -31.04 8.89 25.60 0.23 -30.82 15 8 H 0.02 1.51 8.06 -2.91 -0.02 1.48 15 9 C 0.25 12.07 2.81 44.31 0.12 12.19 15 10 H 0.04 2.07 5.27 -2.39 -0.01 2.06 15 11 C -0.12 -4.67 5.23 30.73 0.16 -4.51 15 12 C -0.12 -3.37 5.96 30.75 0.18 -3.18 15 13 C -0.05 -1.29 6.29 30.01 0.19 -1.10 15 14 C 0.06 2.06 6.59 41.28 0.27 2.33 15 15 C -0.29 -9.79 10.76 21.91 0.24 -9.56 15 16 C 0.01 0.44 12.03 85.26 1.03 1.46 15 17 N -0.34 -17.12 12.28 -56.80 -0.70 -17.82 15 18 N -0.36 -16.75 3.77 -317.27 -1.20 -17.94 15 19 H 0.27 15.82 8.31 -92.71 -0.77 15.05 15 20 H 0.08 3.01 8.14 -2.39 -0.02 2.99 15 21 H 0.06 2.32 8.09 -2.38 -0.02 2.30 15 22 H 0.06 1.71 8.12 -2.39 -0.02 1.69 15 23 H 0.11 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.17 4.29 8.06 -2.91 -0.02 4.27 15 27 H 0.20 5.99 8.06 -2.91 -0.02 5.96 15 Total: -1.00 -74.34 228.59 4.26 -70.08 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.12 Total: 10.47 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 2.88 Total: -31.42 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -1.60 Total: -94.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.85 Total: 45.12 kcal Total: -74.34 4.26 -70.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.484 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds