Wall clock time and date at job start Mon Mar 30 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48507 * 109.47201 * 264.89037 * 3 2 1 5 5 H 1.48494 * 109.47447 * 24.89266 * 3 2 1 6 6 H 1.48497 * 109.46837 * 144.89496 * 3 2 1 7 7 C 1.37875 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 1.62861 * 7 2 1 9 9 C 1.50700 * 119.99961 * 181.63789 * 7 2 1 10 10 H 1.08997 * 109.58043 * 334.13100 * 9 7 2 11 11 C 1.53249 * 109.58219 * 213.85973 * 9 7 2 12 12 C 1.53147 * 109.55683 * 189.49356 * 11 9 7 13 13 C 1.53434 * 109.19242 * 69.43869 * 12 11 9 14 14 C 1.50871 * 108.21142 * 311.41341 * 13 12 11 15 15 C 1.34662 * 127.83473 * 195.74475 * 14 13 12 16 16 C 1.40056 * 107.82908 * 179.97438 * 15 14 13 17 17 N 1.31027 * 108.25275 * 0.02562 * 16 15 14 18 18 N 1.35387 * 124.25678 * 15.79996 * 14 13 12 19 19 H 0.97003 * 119.99566 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.45624 * 69.46197 * 11 9 7 21 21 H 1.09001 * 109.44300 * 309.51059 * 11 9 7 22 22 H 1.09005 * 109.51770 * 309.51670 * 12 11 9 23 23 H 1.08998 * 109.51382 * 189.35355 * 12 11 9 24 24 H 1.08999 * 109.72059 * 71.10490 * 13 12 11 25 25 H 1.09001 * 109.72419 * 191.72314 * 13 12 11 26 26 H 1.08002 * 126.07060 * 359.97438 * 15 14 13 27 27 H 1.08003 * 125.87337 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6047 1.9840 -1.3946 5 1 1.3970 2.6814 0.5893 6 1 3.4886 1.4735 0.8051 7 6 2.0044 -1.1941 -0.0005 8 1 1.4647 -2.1292 -0.0275 9 6 3.5110 -1.1945 0.0368 10 1 3.8871 -0.2640 -0.3885 11 6 4.0445 -2.3816 -0.7723 12 6 5.5521 -2.5224 -0.5426 13 6 5.8014 -2.9905 0.8971 14 6 4.9896 -2.1192 1.8235 15 6 5.1230 -1.9817 3.1564 16 6 4.1550 -1.0683 3.5923 17 7 3.4648 -0.6735 2.5509 18 7 3.9709 -1.3227 1.4227 19 1 -0.4849 0.8401 0.0004 20 1 3.8527 -2.2141 -1.8322 21 1 3.5417 -3.2942 -0.4521 22 1 6.0362 -1.5587 -0.7014 23 1 5.9597 -3.2547 -1.2394 24 1 5.4920 -4.0301 1.0047 25 1 6.8605 -2.8953 1.1367 26 1 5.8477 -2.4862 3.7783 27 1 4.0034 -0.7450 4.6116 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211340.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:21 Heat of formation + Delta-G solvation = 39.899332 kcal Electronic energy + Delta-G solvation = -12083.506885 eV Core-core repulsion = 10034.396179 eV Total energy + Delta-G solvation = -2049.110706 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06594 -37.43752 -35.07025 -33.10824 -30.94976 -29.33270 -27.22679 -23.81837 -22.91576 -21.54796 -19.66528 -19.22839 -17.32720 -16.50261 -15.90393 -15.27375 -15.00985 -14.85008 -14.55059 -14.21793 -13.85019 -13.17082 -12.92392 -12.87537 -12.19187 -11.89259 -11.69818 -11.69306 -11.58852 -10.99320 -10.92185 -9.82942 -9.16303 -8.49381 -6.61485 1.19534 1.26758 1.36713 1.42539 2.01860 2.16322 2.24380 3.05674 3.84140 3.91950 4.04671 4.13354 4.35280 4.48918 4.66695 4.88010 4.97447 4.98044 5.00009 5.12622 5.25830 5.29450 5.43713 5.51891 6.04501 6.09251 6.45014 6.63823 7.10512 7.26513 8.65740 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.016974 C = 0.013987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.869846 B = 1649.196101 C = 2001.338547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.254 1.254 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.036 0.964 9 C 0.235 3.765 10 H 0.046 0.954 11 C -0.113 4.113 12 C -0.121 4.121 13 C -0.050 4.050 14 C 0.048 3.952 15 C -0.293 4.293 16 C 0.001 3.999 17 N -0.338 5.338 18 N -0.352 5.352 19 H 0.272 0.728 20 H 0.091 0.909 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.167 0.833 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.992 -3.979 0.458 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.157 4.157 3 Si 0.767 3.233 4 H -0.179 1.179 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.054 0.946 9 C 0.138 3.862 10 H 0.064 0.936 11 C -0.152 4.152 12 C -0.159 4.159 13 C -0.088 4.088 14 C -0.081 4.081 15 C -0.323 4.323 16 C -0.183 4.183 17 N -0.160 5.160 18 N -0.137 5.137 19 H 0.081 0.919 20 H 0.109 0.891 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.133 0.867 26 H 0.185 0.815 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 12.794 -3.093 -0.127 13.163 hybrid contribution -0.022 0.426 0.653 0.780 sum 12.771 -2.668 0.526 13.058 Atomic orbital electron populations 1.70011 1.08211 1.28701 1.49294 1.25842 0.95315 1.02836 0.91743 0.85803 0.79521 0.78841 0.79136 1.17852 1.21272 1.18646 1.21071 0.90027 0.93365 1.51471 0.94551 1.19695 0.93861 0.97167 0.75454 0.93626 1.21851 0.96467 0.96521 1.00356 1.21769 0.94376 1.02863 0.96869 1.20542 0.99378 0.97331 0.91557 1.22035 0.92830 0.96885 0.96323 1.21262 1.07747 1.09446 0.93803 1.24369 0.95921 0.99151 0.98882 1.77242 1.23493 1.21892 0.93421 1.50614 1.23606 1.31650 1.07821 0.91917 0.89059 0.92620 0.91838 0.87285 0.88639 0.86740 0.81515 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.37 13.96 21.45 0.30 -58.07 15 2 C 0.05 2.70 5.47 84.65 0.46 3.16 15 3 Si 0.94 47.04 26.84 68.60 1.84 48.88 15 4 H -0.25 -11.51 7.11 99.48 0.71 -10.81 15 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 15 6 H -0.26 -13.32 6.95 99.48 0.69 -12.62 15 7 C -0.52 -30.35 8.91 25.60 0.23 -30.12 15 8 H 0.04 2.35 8.06 -2.91 -0.02 2.33 15 9 C 0.24 11.22 2.71 44.31 0.12 11.34 15 10 H 0.05 2.19 5.50 -2.39 -0.01 2.18 15 11 C -0.11 -4.11 5.22 30.73 0.16 -3.95 15 12 C -0.12 -3.18 5.97 30.79 0.18 -3.00 15 13 C -0.05 -1.29 6.29 30.05 0.19 -1.11 15 14 C 0.05 1.82 6.59 41.24 0.27 2.10 15 15 C -0.29 -10.34 10.75 21.89 0.24 -10.10 15 16 C 0.00 0.04 12.03 85.25 1.03 1.06 15 17 N -0.34 -17.13 12.22 -56.80 -0.69 -17.83 15 18 N -0.35 -16.65 3.78 -317.27 -1.20 -17.85 15 19 H 0.27 16.00 8.31 -92.71 -0.77 15.23 15 20 H 0.09 3.05 8.14 -2.38 -0.02 3.03 15 21 H 0.05 2.12 8.09 -2.39 -0.02 2.11 15 22 H 0.06 1.68 8.12 -2.38 -0.02 1.66 15 23 H 0.11 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.11 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.17 4.46 8.06 -2.91 -0.02 4.44 15 27 H 0.20 6.26 8.06 -2.91 -0.02 6.23 15 Total: -1.00 -73.10 228.68 4.26 -68.84 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.14 Total: 6.65 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 2.88 Total: -30.62 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -1.59 Total: -93.75 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.84 Total: 48.88 kcal Total: -73.10 4.26 -68.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211340.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.739 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds