Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30153 * 125.20062 * 2 1 4 4 C 1.35971 * 109.13173 * 180.20379 * 3 2 1 5 5 C 1.41225 * 126.44399 * 179.81785 * 4 3 2 6 6 H 1.08003 * 120.00281 * 185.28017 * 5 4 3 7 7 C 1.39714 * 119.99740 * 5.01589 * 5 4 3 8 8 N 1.31016 * 120.00229 * 354.24971 * 7 5 4 9 9 Si 1.86801 * 120.00106 * 174.25499 * 7 5 4 10 10 H 1.48498 * 109.47192 * 94.97735 * 9 7 5 11 11 H 1.48500 * 109.46848 * 214.97752 * 9 7 5 12 12 H 1.48500 * 109.46944 * 334.97238 * 9 7 5 13 13 C 1.39098 * 107.11985 * 359.56212 * 4 3 2 14 14 N 1.35960 * 125.20334 * 179.71613 * 2 1 3 15 15 C 1.46503 * 126.11183 * 359.93966 * 14 2 1 16 16 C 1.52995 * 117.50275 * 188.76259 * 15 14 2 17 17 C 1.52996 * 117.50652 * 120.09802 * 15 14 2 18 18 H 1.09001 * 109.47269 * 270.28024 * 1 2 3 19 19 H 1.09005 * 109.47377 * 30.27851 * 1 2 3 20 20 H 1.09001 * 109.47508 * 150.28375 * 1 2 3 21 21 H 0.96993 * 120.00388 * 180.02562 * 8 7 5 22 22 H 1.07995 * 126.81367 * 180.28326 * 13 4 3 23 23 H 1.09008 * 115.54112 * 334.42357 * 15 14 2 24 24 H 1.08998 * 117.49998 * 359.97438 * 16 15 14 25 25 H 1.08995 * 117.50543 * 145.01596 * 16 15 14 26 26 H 1.08997 * 117.49966 * 214.98879 * 17 15 14 27 27 H 1.08997 * 117.49527 * 359.97347 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2572 1.0635 0.0000 4 6 3.5638 0.6872 -0.0046 5 6 4.6844 1.5467 -0.0097 6 1 5.6794 1.1362 -0.0991 7 6 4.5055 2.9283 0.0954 8 7 3.2974 3.4351 0.0852 9 14 5.9888 4.0531 0.2503 10 1 6.3674 4.5609 -1.0928 11 1 5.6522 5.1971 1.1353 12 1 7.1259 3.2954 0.8318 13 6 3.5893 -0.7036 0.0027 14 7 2.2907 -1.1109 0.0055 15 6 1.8214 -2.4987 0.0136 16 6 2.8658 -3.5965 0.2256 17 6 2.2387 -3.3926 -1.1558 18 1 -0.3634 0.0050 1.0276 19 1 -0.3634 0.8875 -0.5182 20 1 -0.3634 -0.8925 -0.5094 21 1 3.1732 4.3943 0.1578 22 1 4.4657 -1.3347 0.0059 23 1 0.8308 -2.6574 0.4400 24 1 3.9022 -3.2863 0.3586 25 1 2.5623 -4.4776 0.7909 26 1 1.5227 -4.1395 -1.4988 27 1 2.8621 -2.9480 -1.9316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214331.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = 80.863944 kcal Electronic energy + Delta-G solvation = -11604.538552 eV Core-core repulsion = 9557.204205 eV Total energy + Delta-G solvation = -2047.334347 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.12236 -36.52890 -33.14499 -30.46176 -30.16880 -26.87862 -24.33933 -22.23862 -21.73797 -19.47525 -18.22237 -17.15954 -15.37007 -14.76610 -14.64078 -13.82647 -13.24993 -12.66792 -12.28068 -11.98988 -11.82916 -11.52279 -11.30027 -11.08402 -10.83074 -10.44329 -10.32824 -10.13382 -9.85265 -8.98331 -7.96181 -7.77554 -6.82173 -6.13978 -3.91514 3.15313 3.29860 3.33883 3.40931 3.94541 4.20671 4.29128 4.68673 4.97839 5.10174 5.22336 5.66326 5.74593 5.77367 5.86125 5.96759 6.15750 6.28097 6.28768 6.51509 6.65007 7.35254 7.59097 7.88243 8.01367 8.52267 8.85591 9.20663 9.40179 10.11127 10.80569 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056458 B = 0.010582 C = 0.009151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.828427 B = 2645.296690 C = 3059.169361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.162 3.838 3 N -0.452 5.452 4 C 0.198 3.802 5 C -0.456 4.456 6 H 0.074 0.926 7 C 0.076 3.924 8 N -0.774 5.774 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.266 1.266 13 C -0.231 4.231 14 N -0.439 5.439 15 C 0.078 3.922 16 C -0.181 4.181 17 C -0.191 4.191 18 H 0.060 0.940 19 H 0.077 0.923 20 H 0.054 0.946 21 H 0.265 0.735 22 H 0.139 0.861 23 H 0.124 0.876 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -8.962 -0.194 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 N -0.175 5.175 4 C 0.075 3.925 5 C -0.492 4.492 6 H 0.092 0.908 7 C -0.142 4.142 8 N -0.400 5.400 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.356 4.356 14 N -0.130 5.130 15 C -0.028 4.028 16 C -0.219 4.219 17 C -0.230 4.230 18 H 0.079 0.921 19 H 0.096 0.904 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.156 0.844 23 H 0.142 0.858 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.808 -8.030 -0.171 8.889 hybrid contribution 1.092 -0.413 0.075 1.170 sum -2.716 -8.443 -0.096 8.870 Atomic orbital electron populations 1.19915 0.87755 1.02035 1.01507 1.23406 0.94756 0.82156 1.09501 1.71198 1.02518 1.23715 1.20091 1.18423 0.90314 0.88241 0.95538 1.18445 0.91870 0.90186 1.48654 0.90819 1.25757 0.96033 0.98691 0.93713 1.70108 1.21284 1.12215 1.36421 0.86470 0.82626 0.79964 0.78431 1.20112 1.20636 1.19054 1.22181 0.84665 0.96146 1.32606 1.44081 1.06661 1.02868 1.59421 1.21550 0.98086 0.80199 1.02986 1.23247 0.99498 0.99549 0.99582 1.23396 1.04224 1.02869 0.92531 0.92100 0.90379 0.92736 0.92444 0.84377 0.85830 0.88031 0.88346 0.88490 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.08 36.00 0.36 -0.61 15 2 C 0.16 3.94 7.87 -154.86 -1.22 2.72 15 3 N -0.45 -13.25 9.53 -8.18 -0.08 -13.33 15 4 C 0.20 5.87 6.68 -84.58 -0.57 5.31 15 5 C -0.46 -13.54 9.37 -37.90 -0.36 -13.89 15 6 H 0.07 2.07 7.85 -52.48 -0.41 1.65 15 7 C 0.08 2.16 5.49 -17.35 -0.10 2.07 15 8 N -0.77 -23.02 11.96 55.54 0.66 -22.35 15 9 Si 0.90 20.75 29.56 -169.99 -5.03 15.72 15 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 13 C -0.23 -5.93 10.91 -15.34 -0.17 -6.10 15 14 N -0.44 -9.94 3.08 -105.63 -0.33 -10.26 15 15 C 0.08 1.31 6.36 -67.93 -0.43 0.88 15 16 C -0.18 -2.58 9.98 -26.70 -0.27 -2.85 15 17 C -0.19 -2.74 10.40 -26.70 -0.28 -3.01 15 18 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 19 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 20 H 0.05 0.82 7.67 -51.93 -0.40 0.42 15 21 H 0.27 7.23 8.30 -40.82 -0.34 6.89 15 22 H 0.14 3.27 7.10 -52.49 -0.37 2.90 15 23 H 0.12 1.75 7.83 -51.92 -0.41 1.35 15 24 H 0.10 1.60 6.87 -51.93 -0.36 1.24 15 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.10 1.59 8.14 -51.93 -0.42 1.16 15 LS Contribution 238.91 15.07 3.60 3.60 Total: -1.00 -33.54 238.91 -7.37 -40.92 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.19 Total: 1.19 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.01 Total: -15.49 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.26 Total: -45.94 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.54 -7.37 -40.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214331.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.779 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds