Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30153 * 125.20062 * 2 1 4 4 C 1.35971 * 109.13173 * 180.20379 * 3 2 1 5 5 C 1.41225 * 126.44399 * 179.81785 * 4 3 2 6 6 H 1.08003 * 120.00281 * 185.28017 * 5 4 3 7 7 C 1.39714 * 119.99740 * 5.01589 * 5 4 3 8 8 N 1.31016 * 120.00229 * 354.24971 * 7 5 4 9 9 Si 1.86801 * 120.00106 * 174.25499 * 7 5 4 10 10 H 1.48498 * 109.47192 * 94.97735 * 9 7 5 11 11 H 1.48500 * 109.46848 * 214.97752 * 9 7 5 12 12 H 1.48500 * 109.46944 * 334.97238 * 9 7 5 13 13 C 1.39098 * 107.11985 * 359.56212 * 4 3 2 14 14 N 1.35960 * 125.20334 * 179.71613 * 2 1 3 15 15 C 1.46503 * 126.11183 * 359.93966 * 14 2 1 16 16 C 1.52995 * 117.50275 * 188.76259 * 15 14 2 17 17 C 1.52996 * 117.50652 * 120.09802 * 15 14 2 18 18 H 1.09001 * 109.47269 * 270.28024 * 1 2 3 19 19 H 1.09005 * 109.47377 * 30.27851 * 1 2 3 20 20 H 1.09001 * 109.47508 * 150.28375 * 1 2 3 21 21 H 0.96993 * 120.00388 * 180.02562 * 8 7 5 22 22 H 1.07995 * 126.81367 * 180.28326 * 13 4 3 23 23 H 1.09008 * 115.54112 * 334.42357 * 15 14 2 24 24 H 1.08998 * 117.49998 * 359.97438 * 16 15 14 25 25 H 1.08995 * 117.50543 * 145.01596 * 16 15 14 26 26 H 1.08997 * 117.49966 * 214.98879 * 17 15 14 27 27 H 1.08997 * 117.49527 * 359.97347 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2572 1.0635 0.0000 4 6 3.5638 0.6872 -0.0046 5 6 4.6844 1.5467 -0.0097 6 1 5.6794 1.1362 -0.0991 7 6 4.5055 2.9283 0.0954 8 7 3.2974 3.4351 0.0852 9 14 5.9888 4.0531 0.2503 10 1 6.3674 4.5609 -1.0928 11 1 5.6522 5.1971 1.1353 12 1 7.1259 3.2954 0.8318 13 6 3.5893 -0.7036 0.0027 14 7 2.2907 -1.1109 0.0055 15 6 1.8214 -2.4987 0.0136 16 6 2.8658 -3.5965 0.2256 17 6 2.2387 -3.3926 -1.1558 18 1 -0.3634 0.0050 1.0276 19 1 -0.3634 0.8875 -0.5182 20 1 -0.3634 -0.8925 -0.5094 21 1 3.1732 4.3943 0.1578 22 1 4.4657 -1.3347 0.0059 23 1 0.8308 -2.6574 0.4400 24 1 3.9022 -3.2863 0.3586 25 1 2.5623 -4.4776 0.7909 26 1 1.5227 -4.1395 -1.4988 27 1 2.8621 -2.9480 -1.9316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214331.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = 59.515983 kcal Electronic energy + Delta-G solvation = -11605.464269 eV Core-core repulsion = 9557.204205 eV Total energy + Delta-G solvation = -2048.260064 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.96393 -37.90676 -35.18267 -32.25907 -31.95375 -28.84329 -26.20786 -23.38301 -23.32990 -21.40515 -19.96233 -19.01716 -17.20327 -16.55746 -16.09365 -15.47653 -14.91950 -14.47716 -13.96325 -13.62487 -13.34881 -13.07652 -12.90442 -12.70077 -12.44379 -12.22278 -11.91989 -11.78920 -11.52986 -10.93709 -9.96557 -9.63057 -8.85567 -8.21664 -6.07162 1.32777 1.40793 1.55689 1.64330 2.31107 2.40513 2.62298 2.93925 3.70079 3.72973 3.93041 4.00491 4.10662 4.33382 4.65913 4.73769 4.85193 4.86552 4.94367 5.12440 5.17623 5.32073 5.54209 5.91848 6.02374 6.41711 6.95797 7.14035 7.32913 8.13371 8.75165 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056458 B = 0.010582 C = 0.009151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.828427 B = 2645.296690 C = 3059.169361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.154 3.846 3 N -0.511 5.511 4 C 0.145 3.855 5 C -0.498 4.498 6 H 0.073 0.927 7 C 0.024 3.976 8 N -0.818 5.818 9 Si 0.983 3.017 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.259 1.259 13 C -0.225 4.225 14 N -0.434 5.434 15 C 0.042 3.958 16 C -0.168 4.168 17 C -0.173 4.173 18 H 0.080 0.920 19 H 0.072 0.928 20 H 0.093 0.907 21 H 0.269 0.731 22 H 0.151 0.849 23 H 0.158 0.842 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -10.792 -0.058 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 N -0.235 5.235 4 C 0.021 3.979 5 C -0.533 4.533 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.445 5.445 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.183 1.183 13 C -0.352 4.352 14 N -0.122 5.122 15 C -0.062 4.062 16 C -0.205 4.205 17 C -0.212 4.212 18 H 0.099 0.901 19 H 0.091 0.909 20 H 0.111 0.889 21 H 0.078 0.922 22 H 0.168 0.832 23 H 0.175 0.825 24 H 0.099 0.901 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.419 -9.931 -0.040 10.870 hybrid contribution 1.198 -0.058 0.013 1.199 sum -3.222 -9.988 -0.027 10.495 Atomic orbital electron populations 1.20073 0.83581 1.03684 1.03245 1.24373 0.97061 0.81844 1.07434 1.71072 1.02919 1.26773 1.22708 1.18934 0.91066 0.90117 0.97760 1.18822 0.92187 0.91677 1.50652 0.90885 1.26712 0.99529 0.99954 0.92798 1.70251 1.23816 1.12659 1.37795 0.85210 0.78186 0.77399 0.78783 1.19133 1.19712 1.18293 1.22335 0.86656 0.95294 1.30932 1.44282 1.05217 1.05346 1.57398 1.22197 1.00417 0.77407 1.06221 1.23365 0.97788 0.99411 0.99984 1.23446 1.04089 1.02091 0.91529 0.90150 0.90925 0.88857 0.92166 0.83182 0.82511 0.90077 0.84426 0.84398 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.64 10.08 71.23 0.72 -0.92 15 2 C 0.15 7.50 7.87 137.93 1.09 8.58 15 3 N -0.51 -30.94 9.53 -179.79 -1.71 -32.65 15 4 C 0.15 8.96 6.68 39.44 0.26 9.22 15 5 C -0.50 -30.84 9.37 23.36 0.22 -30.63 15 6 H 0.07 4.28 7.85 -2.91 -0.02 4.26 15 7 C 0.02 1.39 5.49 85.17 0.47 1.86 15 8 N -0.82 -50.54 11.96 21.79 0.26 -50.28 15 9 Si 0.98 43.88 29.56 68.60 2.03 45.91 15 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 12 H -0.26 -11.09 7.11 99.48 0.71 -10.39 15 13 C -0.22 -11.78 10.91 84.24 0.92 -10.87 15 14 N -0.43 -19.28 3.08 -488.09 -1.50 -20.78 15 15 C 0.04 1.26 6.36 44.99 0.29 1.55 15 16 C -0.17 -4.21 9.98 30.62 0.31 -3.90 15 17 C -0.17 -4.32 10.40 30.62 0.32 -4.01 15 18 H 0.08 2.47 8.14 -2.39 -0.02 2.45 15 19 H 0.07 2.58 8.14 -2.38 -0.02 2.56 15 20 H 0.09 2.46 7.67 -2.39 -0.02 2.44 15 21 H 0.27 15.18 8.30 -92.71 -0.77 14.41 15 22 H 0.15 7.24 7.10 -2.91 -0.02 7.22 15 23 H 0.16 3.68 7.83 -2.38 -0.02 3.67 15 24 H 0.08 2.40 6.87 -2.39 -0.02 2.38 15 25 H 0.14 2.40 8.14 -2.39 -0.02 2.38 15 26 H 0.14 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 Total: -1.00 -77.35 238.91 4.81 -72.54 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.16 Total: 14.37 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.58 Total: -29.11 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -2.96 Total: -103.71 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -77.35 4.81 -72.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214331.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.053 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds