Wall clock time and date at job start Mon Mar 30 2020 01:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47499 * 270.00265 * 3 2 1 5 5 H 1.48501 * 109.47194 * 30.00746 * 3 2 1 6 6 H 1.48508 * 109.47015 * 150.00254 * 3 2 1 7 7 C 1.40074 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.40060 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.39620 * 127.06276 * 0.14178 * 9 7 2 11 11 N 1.33019 * 107.46333 * 180.26325 * 10 9 7 12 12 C 1.31018 * 109.98030 * 359.75877 * 11 10 9 13 13 N 1.35072 * 109.64282 * 0.02562 * 12 11 10 14 14 C 1.46506 * 126.48079 * 179.97438 * 13 12 11 15 15 C 1.53779 * 113.61291 * 37.52727 * 14 13 12 16 16 C 1.53786 * 87.07943 * 220.01794 * 15 14 13 17 17 C 1.53774 * 113.61752 * 300.02642 * 14 13 12 18 18 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.08006 * 126.27043 * 0.02562 * 10 9 7 20 20 H 1.07998 * 125.17758 * 179.97438 * 12 11 10 21 21 H 1.08997 * 112.84437 * 168.83108 * 14 13 12 22 22 H 1.08996 * 113.61576 * 334.56115 * 15 14 13 23 23 H 1.09003 * 113.61348 * 105.46649 * 15 14 13 24 24 H 1.09000 * 113.60727 * 270.88326 * 16 15 14 25 25 H 1.08992 * 113.61712 * 139.98084 * 16 15 14 26 26 H 1.08997 * 113.61707 * 254.53367 * 17 14 13 27 27 H 1.09006 * 113.61242 * 25.43559 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4401 2.6526 0.7002 6 1 3.5402 1.4401 0.7000 7 6 2.0089 -1.2131 -0.0005 8 1 3.0889 -1.2131 -0.0010 9 6 1.3086 -2.4260 -0.0005 10 6 -0.0770 -2.5976 -0.0028 11 7 -0.3173 -3.9059 0.0039 12 6 0.8130 -4.5686 0.0051 13 7 1.8481 -3.7009 -0.0004 14 6 3.2724 -4.0440 -0.0007 15 6 3.6084 -5.2788 -0.8535 16 6 4.5870 -5.6848 0.2611 17 6 3.7078 -4.8679 1.2226 18 1 -0.4850 0.8401 0.0004 19 1 -0.8182 -1.8120 -0.0053 20 1 0.9032 -5.6448 0.0105 21 1 3.9143 -3.1861 -0.2002 22 1 2.7723 -5.9678 -0.9727 23 1 4.0973 -5.0376 -1.7974 24 1 5.5893 -5.2762 0.1322 25 1 4.5887 -6.7540 0.4726 26 1 4.2768 -4.2951 1.9548 27 1 2.8987 -5.4447 1.6710 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:37 Heat of formation + Delta-G solvation = 66.055198 kcal Electronic energy + Delta-G solvation = -11786.688193 eV Core-core repulsion = 9738.711690 eV Total energy + Delta-G solvation = -2047.976503 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13599 -37.66768 -33.54602 -31.01621 -28.39485 -25.37965 -24.62542 -24.43211 -20.32877 -19.72897 -18.15045 -17.28741 -15.69837 -15.08689 -14.72356 -13.59450 -13.20875 -12.82436 -12.43719 -12.21320 -12.06023 -11.61686 -11.21844 -11.05086 -10.81781 -10.42594 -10.22765 -10.19743 -9.98980 -9.36776 -8.13285 -7.99305 -6.84834 -6.57044 -4.18414 2.98520 3.10511 3.13850 3.71793 3.95117 4.35485 4.77048 4.84250 4.91952 5.17382 5.30530 5.54843 5.81344 5.84793 5.99229 6.05073 6.20208 6.23421 6.32971 6.59667 7.03977 7.17632 7.70833 7.92784 8.06551 8.56543 8.95017 9.10813 9.21073 10.06510 10.38764 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041890 B = 0.012770 C = 0.010265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.254079 B = 2192.167853 C = 2727.145029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.071 3.929 3 Si 0.923 3.077 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.444 4.444 8 H 0.068 0.932 9 C 0.175 3.825 10 C -0.137 4.137 11 N -0.488 5.488 12 C 0.050 3.950 13 N -0.484 5.484 14 C 0.132 3.868 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.149 4.149 18 H 0.277 0.723 19 H 0.183 0.817 20 H 0.161 0.839 21 H 0.109 0.891 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -4.058 0.196 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.145 4.145 3 Si 0.748 3.252 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.286 4.286 11 N -0.207 5.207 12 C -0.222 4.222 13 N -0.177 5.177 14 C 0.027 3.973 15 C -0.185 4.185 16 C -0.177 4.177 17 C -0.188 4.188 18 H 0.089 0.911 19 H 0.200 0.800 20 H 0.179 0.821 21 H 0.127 0.873 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.444 -4.340 0.198 8.619 hybrid contribution 1.295 1.055 0.004 1.670 sum 8.739 -3.285 0.202 9.338 Atomic orbital electron populations 1.69630 1.07255 1.28373 1.37809 1.25640 0.94848 1.00669 0.93312 0.86077 0.79816 0.80356 0.78943 1.19647 1.20189 1.19012 1.18328 0.93600 0.88605 1.47413 0.91364 1.19077 0.93229 0.82790 0.98541 1.23379 0.94065 0.90957 1.20181 1.69516 1.26696 1.07430 1.17025 1.23448 0.82767 0.95335 1.20678 1.45041 1.04312 1.07101 1.61260 1.22433 0.82376 0.96460 0.96058 1.23362 0.99413 0.97970 0.97791 1.22694 0.97887 1.00033 0.97099 1.23410 0.99548 0.98606 0.97235 0.91139 0.80017 0.82148 0.87336 0.89513 0.91290 0.90189 0.91271 0.91323 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.59 10.35 55.56 0.57 -21.02 15 2 C 0.07 1.85 5.50 -17.28 -0.09 1.75 15 3 Si 0.92 19.17 29.56 -169.99 -5.03 14.15 15 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 15 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.44 -12.04 9.09 -38.21 -0.35 -12.38 15 8 H 0.07 1.73 7.03 -52.49 -0.37 1.36 15 9 C 0.17 4.91 6.74 -83.68 -0.56 4.34 15 10 C -0.14 -4.06 10.88 -16.52 -0.18 -4.24 15 11 N -0.49 -13.73 11.18 -13.59 -0.15 -13.89 15 12 C 0.05 1.23 11.35 -89.92 -1.02 0.21 15 13 N -0.48 -11.72 2.99 -107.68 -0.32 -12.04 15 14 C 0.13 2.50 4.53 -67.12 -0.30 2.19 15 15 C -0.15 -2.23 7.64 -25.92 -0.20 -2.42 15 16 C -0.14 -1.76 8.08 -25.92 -0.21 -1.97 15 17 C -0.15 -2.34 7.76 -25.92 -0.20 -2.54 15 18 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 19 H 0.18 5.57 5.78 -52.48 -0.30 5.26 15 20 H 0.16 3.33 7.42 -52.49 -0.39 2.94 15 21 H 0.11 2.06 7.18 -51.93 -0.37 1.68 15 22 H 0.09 1.34 6.92 -51.93 -0.36 0.98 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.08 1.40 7.91 -51.93 -0.41 0.99 15 LS Contribution 230.06 15.07 3.47 3.47 Total: -1.00 -30.54 230.06 -7.61 -38.15 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.03 Total: 6.24 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.12 Total: -15.06 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.10 Total: -46.94 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.54 -7.61 -38.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.201 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds