Wall clock time and date at job start Mon Mar 30 2020 01:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47499 * 270.00265 * 3 2 1 5 5 H 1.48501 * 109.47194 * 30.00746 * 3 2 1 6 6 H 1.48508 * 109.47015 * 150.00254 * 3 2 1 7 7 C 1.40074 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.40060 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.39620 * 127.06276 * 0.14178 * 9 7 2 11 11 N 1.33019 * 107.46333 * 180.26325 * 10 9 7 12 12 C 1.31018 * 109.98030 * 359.75877 * 11 10 9 13 13 N 1.35072 * 109.64282 * 0.02562 * 12 11 10 14 14 C 1.46506 * 126.48079 * 179.97438 * 13 12 11 15 15 C 1.53779 * 113.61291 * 37.52727 * 14 13 12 16 16 C 1.53786 * 87.07943 * 220.01794 * 15 14 13 17 17 C 1.53774 * 113.61752 * 300.02642 * 14 13 12 18 18 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.08006 * 126.27043 * 0.02562 * 10 9 7 20 20 H 1.07998 * 125.17758 * 179.97438 * 12 11 10 21 21 H 1.08997 * 112.84437 * 168.83108 * 14 13 12 22 22 H 1.08996 * 113.61576 * 334.56115 * 15 14 13 23 23 H 1.09003 * 113.61348 * 105.46649 * 15 14 13 24 24 H 1.09000 * 113.60727 * 270.88326 * 16 15 14 25 25 H 1.08992 * 113.61712 * 139.98084 * 16 15 14 26 26 H 1.08997 * 113.61707 * 254.53367 * 17 14 13 27 27 H 1.09006 * 113.61242 * 25.43559 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4401 2.6526 0.7002 6 1 3.5402 1.4401 0.7000 7 6 2.0089 -1.2131 -0.0005 8 1 3.0889 -1.2131 -0.0010 9 6 1.3086 -2.4260 -0.0005 10 6 -0.0770 -2.5976 -0.0028 11 7 -0.3173 -3.9059 0.0039 12 6 0.8130 -4.5686 0.0051 13 7 1.8481 -3.7009 -0.0004 14 6 3.2724 -4.0440 -0.0007 15 6 3.6084 -5.2788 -0.8535 16 6 4.5870 -5.6848 0.2611 17 6 3.7078 -4.8679 1.2226 18 1 -0.4850 0.8401 0.0004 19 1 -0.8182 -1.8120 -0.0053 20 1 0.9032 -5.6448 0.0105 21 1 3.9143 -3.1861 -0.2002 22 1 2.7723 -5.9678 -0.9727 23 1 4.0973 -5.0376 -1.7974 24 1 5.5893 -5.2762 0.1322 25 1 4.5887 -6.7540 0.4726 26 1 4.2768 -4.2951 1.9548 27 1 2.8987 -5.4447 1.6710 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:36 Heat of formation + Delta-G solvation = 48.094115 kcal Electronic energy + Delta-G solvation = -11787.467044 eV Core-core repulsion = 9738.711690 eV Total energy + Delta-G solvation = -2048.755354 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99761 -39.09872 -35.53734 -32.88099 -30.41000 -26.73367 -26.53754 -25.87233 -22.00661 -21.66465 -19.82780 -19.02824 -17.58578 -16.48140 -16.34128 -15.42091 -14.78663 -14.63137 -14.15200 -13.94474 -13.44580 -13.11184 -12.86379 -12.78692 -12.55874 -11.96399 -11.87837 -11.48562 -11.32562 -11.27554 -10.23024 -9.91165 -8.92200 -8.51277 -6.27163 1.30019 1.40204 1.55581 1.86225 2.20422 2.62227 2.78125 3.37131 3.59794 3.73905 3.92175 4.01705 4.31840 4.56039 4.76930 4.78440 4.98859 5.00733 5.06384 5.12289 5.15349 5.44165 5.69889 5.86468 6.05999 6.53689 6.87472 6.99504 7.29896 7.99039 8.46776 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041890 B = 0.012770 C = 0.010265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.254079 B = 2192.167853 C = 2727.145029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.023 3.977 3 Si 1.004 2.996 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.473 4.473 8 H 0.078 0.922 9 C 0.151 3.849 10 C -0.184 4.184 11 N -0.526 5.526 12 C 0.074 3.926 13 N -0.484 5.484 14 C 0.101 3.899 15 C -0.140 4.140 16 C -0.112 4.112 17 C -0.147 4.147 18 H 0.285 0.715 19 H 0.160 0.840 20 H 0.202 0.798 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.874 -4.672 0.203 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.189 4.189 3 Si 0.824 3.176 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.508 4.508 8 H 0.097 0.903 9 C 0.039 3.961 10 C -0.330 4.330 11 N -0.245 5.245 12 C -0.202 4.202 13 N -0.175 5.175 14 C -0.002 4.002 15 C -0.179 4.179 16 C -0.150 4.150 17 C -0.185 4.185 18 H 0.095 0.905 19 H 0.177 0.823 20 H 0.219 0.781 21 H 0.120 0.880 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.975 -4.970 0.205 11.146 hybrid contribution 0.506 1.141 0.001 1.248 sum 10.481 -3.829 0.206 11.161 Atomic orbital electron populations 1.69756 1.09091 1.29806 1.37876 1.26778 0.95693 1.04474 0.91994 0.84877 0.78479 0.74913 0.79339 1.18748 1.19376 1.17932 1.18706 0.94231 0.89156 1.48674 0.90344 1.19359 0.93142 0.84748 0.98897 1.23202 0.94880 0.91407 1.23560 1.69439 1.28723 1.07079 1.19258 1.24203 0.82191 0.96922 1.16843 1.45326 1.06515 1.05624 1.60062 1.23070 0.79246 0.97999 0.99917 1.23359 1.00172 0.95584 0.98751 1.22637 0.97618 1.01154 0.93557 1.23396 1.00032 0.98403 0.96694 0.90459 0.82285 0.78104 0.87991 0.89657 0.90212 0.88091 0.88727 0.90819 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.56 10.35 21.86 0.23 -46.34 15 2 C 0.02 1.23 5.50 85.28 0.47 1.69 15 3 Si 1.00 39.08 29.56 68.60 2.03 41.11 15 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 7 C -0.47 -26.07 9.09 23.16 0.21 -25.86 15 8 H 0.08 4.00 7.03 -2.91 -0.02 3.98 15 9 C 0.15 8.72 6.74 38.88 0.26 8.98 15 10 C -0.18 -11.39 10.88 84.85 0.92 -10.46 15 11 N -0.53 -30.27 11.18 -196.91 -2.20 -32.47 15 12 C 0.07 3.58 11.35 180.10 2.04 5.62 15 13 N -0.48 -23.31 2.99 -494.58 -1.48 -24.79 15 14 C 0.10 3.65 4.53 45.51 0.21 3.86 15 15 C -0.14 -3.80 7.64 31.12 0.24 -3.56 15 16 C -0.11 -2.32 8.08 31.12 0.25 -2.07 15 17 C -0.15 -4.20 7.76 31.12 0.24 -3.96 15 18 H 0.28 14.29 8.30 -92.71 -0.77 13.52 15 19 H 0.16 10.39 5.78 -2.91 -0.02 10.38 15 20 H 0.20 7.84 7.42 -2.91 -0.02 7.81 15 21 H 0.10 3.77 7.18 -2.39 -0.02 3.75 15 22 H 0.08 2.35 6.92 -2.39 -0.02 2.33 15 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 27 H 0.08 2.35 7.91 -2.38 -0.02 2.33 15 Total: -1.00 -68.70 230.06 4.58 -64.11 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.16 Total: 24.14 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.85 Total: -25.77 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.45 Total: -103.60 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -68.70 4.58 -64.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.207 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds