Wall clock time and date at job start Mon Mar 30 2020 01:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48494 * 109.47439 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47054 * 300.00604 * 3 2 1 6 6 H 1.48503 * 109.46929 * 60.00228 * 3 2 1 7 7 C 1.37881 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99570 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.44748 * 300.04630 * 9 7 2 11 11 C 1.53136 * 109.45752 * 180.10051 * 9 7 2 12 12 C 1.53441 * 109.19824 * 170.54569 * 11 9 7 13 13 C 1.50872 * 108.17448 * 48.55716 * 12 11 9 14 14 C 1.34747 * 127.76156 * 164.21970 * 13 12 11 15 15 C 1.40062 * 107.79823 * 180.02562 * 14 13 12 16 16 N 1.31035 * 108.25250 * 359.97438 * 15 14 13 17 17 N 1.35290 * 124.32409 * 344.23430 * 13 12 11 18 18 C 1.46596 * 124.54514 * 359.87351 * 17 13 12 19 19 H 0.96996 * 119.99797 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.51854 * 50.62972 * 11 9 7 21 21 H 1.09002 * 109.51009 * 290.46371 * 11 9 7 22 22 H 1.08995 * 109.72074 * 288.88376 * 12 11 9 23 23 H 1.09006 * 109.75735 * 168.24716 * 12 11 9 24 24 H 1.07997 * 126.10112 * 0.05438 * 14 13 12 25 25 H 1.07998 * 125.87621 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.58010 * 102.52124 * 18 17 13 27 27 H 1.09000 * 109.58093 * 222.92952 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5563 0.8894 11 6 2.2464 -3.6629 0.0014 12 6 1.4878 -4.9752 0.2394 13 6 0.3059 -5.0122 -0.6976 14 6 -0.4472 -6.0777 -1.0343 15 6 -1.4302 -5.6409 -1.9313 16 7 -1.2686 -4.3547 -2.1230 17 7 -0.1797 -3.9347 -1.3560 18 6 0.3698 -2.5796 -1.2517 19 1 -0.4850 0.8400 0.0004 20 1 2.9775 -3.5155 0.7963 21 1 2.7571 -3.7067 -0.9606 22 1 1.1404 -5.0172 1.2716 23 1 2.1439 -5.8220 0.0375 24 1 -0.3164 -7.0881 -0.6761 25 1 -2.1907 -6.2579 -2.3867 26 1 0.9688 -2.3593 -2.1353 27 1 -0.4451 -1.8602 -1.1715 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:27 Heat of formation + Delta-G solvation = 58.242462 kcal Electronic energy + Delta-G solvation = -11863.727723 eV Core-core repulsion = 9815.412435 eV Total energy + Delta-G solvation = -2048.315288 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.66261 -35.98216 -32.74073 -31.41258 -29.51792 -27.40162 -24.93326 -22.98036 -20.82287 -20.33753 -17.94553 -16.51062 -15.75017 -14.71832 -14.54880 -13.57986 -13.40337 -13.18253 -12.77457 -12.64943 -12.12213 -11.22028 -11.12169 -10.95513 -10.58707 -10.57734 -10.17226 -9.82321 -9.39822 -9.21601 -8.68054 -8.37891 -7.78055 -6.23313 -4.31479 2.68016 3.19063 3.28508 3.31748 3.45201 3.48088 4.27610 5.08645 5.25272 5.44820 5.64104 5.72673 6.07091 6.13355 6.26520 6.36400 6.43404 6.60804 6.70618 6.82510 6.92048 7.31266 7.40928 7.52135 7.74293 7.85788 8.17345 8.54188 8.74200 9.36122 10.83887 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.063972 B = 0.011081 C = 0.009816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.587263 B = 2526.260922 C = 2851.944169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.039 3.961 10 H 0.038 0.962 11 C -0.117 4.117 12 C -0.060 4.060 13 C 0.089 3.911 14 C -0.298 4.298 15 C 0.021 3.979 16 N -0.309 5.309 17 N -0.343 5.343 18 C 0.129 3.871 19 H 0.266 0.734 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.171 0.829 26 H 0.062 0.938 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -7.384 -0.214 7.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.019 3.981 10 H 0.056 0.944 11 C -0.155 4.155 12 C -0.099 4.099 13 C -0.042 4.042 14 C -0.328 4.328 15 C -0.163 4.163 16 N -0.132 5.132 17 N -0.125 5.125 18 C 0.010 3.990 19 H 0.076 0.924 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.153 0.847 25 H 0.188 0.812 26 H 0.081 0.919 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.229 -6.041 -0.847 6.223 hybrid contribution 0.535 0.162 0.331 0.650 sum 1.764 -5.880 -0.516 6.160 Atomic orbital electron populations 1.69855 1.06061 1.27264 1.49437 1.25092 0.94966 0.99734 0.94290 0.86394 0.80062 0.83005 0.77785 1.19548 1.20811 1.20797 1.21082 0.93233 0.89432 1.51926 0.91583 1.19042 0.92675 0.93422 0.92958 0.94418 1.21787 0.98806 0.93564 1.01356 1.20500 0.92644 0.99753 0.96982 1.21135 0.97722 0.88119 0.97215 1.20894 1.02726 0.99270 1.09863 1.23685 1.00094 0.92757 0.99736 1.77196 1.05339 1.13103 1.17519 1.49552 1.21596 1.09412 1.31979 1.22691 0.99466 0.76289 1.00538 0.92402 0.91463 0.92754 0.90173 0.90506 0.84666 0.81185 0.91944 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 11.45 55.43 0.63 -23.86 15 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.28 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.52 -13.37 8.53 -34.44 -0.29 -13.66 15 8 H 0.07 1.66 7.74 -52.49 -0.41 1.25 15 9 C 0.04 0.93 2.10 -91.58 -0.19 0.73 15 10 H 0.04 0.99 8.12 -51.93 -0.42 0.57 15 11 C -0.12 -2.30 5.21 -26.43 -0.14 -2.44 15 12 C -0.06 -1.04 6.29 -27.57 -0.17 -1.21 15 13 C 0.09 1.78 6.59 -82.22 -0.54 1.23 15 14 C -0.30 -5.37 10.76 -40.13 -0.43 -5.80 15 15 C 0.02 0.40 12.03 -17.21 -0.21 0.19 15 16 N -0.31 -6.92 12.62 30.70 0.39 -6.53 15 17 N -0.34 -7.86 4.04 -56.95 -0.23 -8.09 15 18 C 0.13 3.14 6.18 -3.86 -0.02 3.12 15 19 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 20 H 0.07 1.23 8.12 -51.93 -0.42 0.81 15 21 H 0.05 1.06 8.12 -51.93 -0.42 0.64 15 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.14 1.99 8.06 -52.49 -0.42 1.57 15 25 H 0.17 2.43 8.06 -52.49 -0.42 2.00 15 26 H 0.06 1.52 8.12 -51.93 -0.42 1.10 15 27 H 0.11 3.10 6.40 -51.93 -0.33 2.77 15 LS Contribution 229.29 15.07 3.46 3.46 Total: -1.00 -28.52 229.29 -6.12 -34.64 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.25 Total: 1.41 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.10 Total: -16.30 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.79 Total: -38.49 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.52 -6.12 -34.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.880 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds