Wall clock time and date at job start Mon Mar 30 2020 01:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48494 * 109.47439 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47054 * 300.00604 * 3 2 1 6 6 H 1.48503 * 109.46929 * 60.00228 * 3 2 1 7 7 C 1.37881 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99570 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.44748 * 300.04630 * 9 7 2 11 11 C 1.53136 * 109.45752 * 180.10051 * 9 7 2 12 12 C 1.53441 * 109.19824 * 170.54569 * 11 9 7 13 13 C 1.50872 * 108.17448 * 48.55716 * 12 11 9 14 14 C 1.34747 * 127.76156 * 164.21970 * 13 12 11 15 15 C 1.40062 * 107.79823 * 180.02562 * 14 13 12 16 16 N 1.31035 * 108.25250 * 359.97438 * 15 14 13 17 17 N 1.35290 * 124.32409 * 344.23430 * 13 12 11 18 18 C 1.46596 * 124.54514 * 359.87351 * 17 13 12 19 19 H 0.96996 * 119.99797 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.51854 * 50.62972 * 11 9 7 21 21 H 1.09002 * 109.51009 * 290.46371 * 11 9 7 22 22 H 1.08995 * 109.72074 * 288.88376 * 12 11 9 23 23 H 1.09006 * 109.75735 * 168.24716 * 12 11 9 24 24 H 1.07997 * 126.10112 * 0.05438 * 14 13 12 25 25 H 1.07998 * 125.87621 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.58010 * 102.52124 * 18 17 13 27 27 H 1.09000 * 109.58093 * 222.92952 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6243 -2.5563 0.8894 11 6 2.2464 -3.6629 0.0014 12 6 1.4878 -4.9752 0.2394 13 6 0.3059 -5.0122 -0.6976 14 6 -0.4472 -6.0777 -1.0343 15 6 -1.4302 -5.6409 -1.9313 16 7 -1.2686 -4.3547 -2.1230 17 7 -0.1797 -3.9347 -1.3560 18 6 0.3698 -2.5796 -1.2517 19 1 -0.4850 0.8400 0.0004 20 1 2.9775 -3.5155 0.7963 21 1 2.7571 -3.7067 -0.9606 22 1 1.1404 -5.0172 1.2716 23 1 2.1439 -5.8220 0.0375 24 1 -0.3164 -7.0881 -0.6761 25 1 -2.1907 -6.2579 -2.3867 26 1 0.9688 -2.3593 -2.1353 27 1 -0.4451 -1.8602 -1.1715 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:26 Heat of formation + Delta-G solvation = 40.828017 kcal Electronic energy + Delta-G solvation = -11864.482870 eV Core-core repulsion = 9815.412435 eV Total energy + Delta-G solvation = -2049.070435 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21838 -37.70480 -34.58684 -33.05019 -31.22737 -29.02087 -26.82472 -24.63383 -22.53260 -21.85154 -19.59929 -18.49501 -17.36695 -16.48796 -16.27386 -15.14172 -15.00617 -14.77405 -14.48919 -14.18166 -13.79546 -12.96572 -12.91581 -12.61101 -12.40799 -12.26204 -11.75216 -11.53114 -11.12130 -11.10199 -10.66832 -10.03396 -9.32558 -8.23277 -6.38972 1.13276 1.40143 1.43259 1.54839 1.84349 2.03462 2.38430 3.08137 3.77749 4.01759 4.17165 4.19975 4.51442 4.60058 4.67812 4.85727 4.92401 4.97562 5.10218 5.19059 5.38961 5.47118 5.61547 5.79079 5.95297 6.06517 6.35778 6.73706 7.00411 7.32663 8.83151 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.063972 B = 0.011081 C = 0.009816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.587263 B = 2526.260922 C = 2851.944169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.006 0.994 11 C -0.111 4.111 12 C -0.054 4.054 13 C 0.070 3.930 14 C -0.288 4.288 15 C 0.032 3.968 16 N -0.360 5.360 17 N -0.374 5.374 18 C 0.146 3.854 19 H 0.265 0.735 20 H 0.081 0.919 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.117 0.883 24 H 0.177 0.823 25 H 0.213 0.787 26 H 0.048 0.952 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -9.145 0.075 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.019 3.981 10 H 0.024 0.976 11 C -0.149 4.149 12 C -0.092 4.092 13 C -0.058 4.058 14 C -0.317 4.317 15 C -0.153 4.153 16 N -0.182 5.182 17 N -0.156 5.156 18 C 0.026 3.974 19 H 0.074 0.926 20 H 0.099 0.901 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.135 0.865 24 H 0.194 0.806 25 H 0.230 0.770 26 H 0.067 0.933 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.247 -7.827 -0.551 8.162 hybrid contribution 0.156 0.599 0.226 0.659 sum 2.403 -7.228 -0.324 7.624 Atomic orbital electron populations 1.70012 1.07606 1.27850 1.50579 1.25917 0.95641 1.03191 0.94007 0.85389 0.79286 0.78830 0.77506 1.18326 1.20897 1.20615 1.21473 0.93670 0.90541 1.51346 0.91047 1.18964 0.93035 0.94902 0.91198 0.97632 1.21683 0.98085 0.93209 1.01882 1.20597 0.92007 0.99568 0.96999 1.21849 0.98805 0.87857 0.97323 1.21392 1.01310 1.00431 1.08602 1.24493 1.00360 0.91745 0.98670 1.77157 1.06302 1.15444 1.19270 1.49397 1.22924 1.09313 1.33999 1.22132 0.97981 0.77192 1.00116 0.92602 0.90067 0.92799 0.89025 0.86459 0.80593 0.77025 0.93332 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.71 11.45 21.45 0.25 -52.47 15 2 C 0.01 0.64 5.30 84.66 0.45 1.09 15 3 Si 0.96 42.05 29.54 68.60 2.03 44.07 15 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.53 -27.81 8.53 25.60 0.22 -27.59 15 8 H 0.07 3.57 7.74 -2.91 -0.02 3.54 15 9 C 0.04 1.89 2.10 -11.41 -0.02 1.87 15 10 H 0.01 0.30 8.12 -2.39 -0.02 0.28 15 11 C -0.11 -4.21 5.21 30.79 0.16 -4.05 15 12 C -0.05 -1.69 6.29 30.05 0.19 -1.50 15 13 C 0.07 2.69 6.59 41.28 0.27 2.96 15 14 C -0.29 -9.37 10.76 21.91 0.24 -9.13 15 15 C 0.03 1.09 12.03 85.25 1.03 2.11 15 16 N -0.36 -16.05 12.62 -56.79 -0.72 -16.77 15 17 N -0.37 -17.24 4.04 -334.09 -1.35 -18.59 15 18 C 0.15 7.43 6.18 86.44 0.53 7.96 15 19 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 20 H 0.08 2.82 8.12 -2.38 -0.02 2.80 15 21 H 0.05 2.03 8.12 -2.39 -0.02 2.01 15 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 23 H 0.12 2.80 8.14 -2.38 -0.02 2.78 15 24 H 0.18 4.20 8.06 -2.91 -0.02 4.17 15 25 H 0.21 5.20 8.06 -2.91 -0.02 5.18 15 26 H 0.05 2.49 8.12 -2.39 -0.02 2.47 15 27 H 0.08 4.41 6.40 -2.39 -0.02 4.40 15 Total: -1.00 -63.38 229.29 4.42 -58.97 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.15 Total: 11.06 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 3.06 Total: -26.27 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -1.82 Total: -87.82 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -63.38 4.42 -58.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.796 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds