Wall clock time and date at job start Mon Mar 30 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99617 * 2 1 4 4 H 1.48505 * 109.47300 * 270.00209 * 3 2 1 5 5 H 1.48504 * 109.47082 * 30.00290 * 3 2 1 6 6 H 1.48500 * 109.46911 * 150.00188 * 3 2 1 7 7 C 1.37869 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00021 * 185.07114 * 7 2 1 9 9 C 1.50702 * 120.00407 * 5.07100 * 7 2 1 10 10 H 1.09000 * 109.47028 * 325.18261 * 9 7 2 11 11 C 1.50699 * 109.47060 * 85.17830 * 9 7 2 12 12 C 1.39875 * 126.04018 * 60.00612 * 11 9 7 13 13 N 1.30834 * 108.19999 * 179.97438 * 12 11 9 14 14 N 1.40082 * 108.20973 * 359.97438 * 13 12 11 15 15 H 0.96994 * 126.03914 * 179.97438 * 14 13 12 16 16 C 1.34949 * 107.92313 * 359.97438 * 14 13 12 17 17 C 1.52997 * 109.47551 * 205.18002 * 9 7 2 18 18 C 1.52997 * 117.49998 * 134.06055 * 17 9 7 19 19 C 1.53002 * 117.49804 * 65.40119 * 17 9 7 20 20 H 0.97001 * 120.00337 * 359.97438 * 1 2 3 21 21 H 1.07998 * 125.89566 * 359.97438 * 12 11 9 22 22 H 1.08005 * 126.12244 * 179.73594 * 16 14 13 23 23 H 1.09000 * 115.55097 * 279.73979 * 17 9 7 24 24 H 1.08998 * 117.49735 * 0.02562 * 18 17 9 25 25 H 1.09005 * 117.50006 * 145.02159 * 18 17 9 26 26 H 1.08995 * 117.50360 * 214.97767 * 19 17 9 27 27 H 1.09003 * 117.49824 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 0.0821 9 6 1.2555 -2.4965 -0.1165 10 1 0.3008 -2.4142 0.4029 11 6 1.0110 -2.8077 -1.5706 12 6 1.9932 -2.9858 -2.5505 13 7 1.3958 -3.2406 -3.6862 14 7 0.0126 -3.2333 -3.4646 15 1 -0.6731 -3.3921 -4.1320 16 6 -0.1973 -2.9662 -2.1586 17 6 2.0834 -3.6187 0.5130 18 6 1.3614 -4.5889 1.4501 19 6 2.3322 -3.5523 2.0212 20 1 -0.4851 0.8400 0.0004 21 1 3.0603 -2.9237 -2.3961 22 1 -1.1579 -2.8873 -1.6712 23 1 2.8809 -4.0216 -0.1114 24 1 0.2965 -4.4279 1.6179 25 1 1.6840 -5.6301 1.4426 26 1 3.2931 -3.9119 2.3891 27 1 1.9065 -2.7089 2.5649 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236969.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:28 Heat of formation + Delta-G solvation = 89.831114 kcal Electronic energy + Delta-G solvation = -11734.109678 eV Core-core repulsion = 9687.164176 eV Total energy + Delta-G solvation = -2046.945502 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.08859 -36.59376 -32.85648 -30.71367 -29.88544 -26.62653 -23.36961 -21.47137 -20.98353 -19.81739 -18.76418 -16.93943 -15.90175 -14.66303 -14.31635 -13.62720 -13.45731 -12.99729 -12.29791 -11.88252 -11.55570 -11.16707 -10.85279 -10.69208 -10.51533 -9.92186 -9.85176 -9.36002 -9.09546 -8.69873 -8.63041 -8.36033 -7.22440 -5.96981 -3.98153 2.88972 3.34177 3.41078 3.43737 3.82294 4.00193 4.47590 4.87040 5.37703 5.68166 5.90809 5.96334 5.99951 6.08401 6.36742 6.56274 6.65485 6.86337 6.87795 7.02425 7.12579 7.44232 7.81080 7.85978 8.01049 8.21048 8.44586 8.67365 9.07456 9.64626 11.11416 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.017336 C = 0.012173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.034566 B = 1614.745045 C = 2299.608997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.056 0.944 9 C 0.130 3.870 10 H 0.056 0.944 11 C -0.159 4.159 12 C 0.054 3.946 13 N -0.327 5.327 14 N -0.498 5.498 15 H 0.425 0.575 16 C 0.031 3.969 17 C -0.113 4.113 18 C -0.202 4.202 19 C -0.175 4.175 20 H 0.258 0.742 21 H 0.170 0.830 22 H 0.162 0.838 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -5.605 -0.779 5.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.110 3.890 10 H 0.074 0.926 11 C -0.170 4.170 12 C -0.132 4.132 13 N -0.151 5.151 14 N -0.208 5.208 15 H 0.266 0.734 16 C -0.114 4.114 17 C -0.132 4.132 18 C -0.239 4.239 19 C -0.212 4.212 20 H 0.068 0.932 21 H 0.187 0.813 22 H 0.179 0.821 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.055 -5.721 -1.961 6.048 hybrid contribution -0.083 1.221 0.460 1.308 sum -0.027 -4.499 -1.501 4.743 Atomic orbital electron populations 1.69915 1.05903 1.26351 1.50714 1.24921 0.94766 0.98928 0.94944 0.86696 0.80039 0.83855 0.78026 1.20861 1.21459 1.19826 1.20971 0.93217 0.89858 1.49274 0.92552 1.16939 0.96012 0.90324 0.85744 0.92554 1.20820 0.90196 1.06035 0.99907 1.23600 1.00139 0.99280 0.90180 1.77040 0.87390 1.26808 1.23813 1.46062 1.06096 1.60124 1.08515 0.73411 1.22249 1.00393 1.04028 0.84689 1.22453 1.00707 0.98734 0.91289 1.22962 0.98022 0.94738 1.08151 1.22732 0.99045 1.00878 0.98525 0.93199 0.81304 0.82065 0.89934 0.89659 0.90743 0.90688 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 12.92 55.43 0.72 -24.29 15 2 C 0.07 1.79 5.45 -17.82 -0.10 1.70 15 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 15 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.50 -13.02 7.94 -34.44 -0.27 -13.29 15 8 H 0.06 1.48 7.81 -52.48 -0.41 1.07 15 9 C 0.13 3.07 2.24 -92.92 -0.21 2.87 15 10 H 0.06 1.47 7.30 -51.93 -0.38 1.09 15 11 C -0.16 -3.58 4.79 -105.05 -0.50 -4.09 15 12 C 0.05 1.17 11.43 -17.36 -0.20 0.97 15 13 N -0.33 -6.85 12.70 30.62 0.39 -6.46 15 14 N -0.50 -9.31 7.36 30.45 0.22 -9.08 15 15 H 0.42 6.17 8.96 -182.62 -1.64 4.53 15 16 C 0.03 0.63 11.88 -17.22 -0.20 0.42 15 17 C -0.11 -2.32 4.99 -90.62 -0.45 -2.78 15 18 C -0.20 -3.64 10.18 -26.70 -0.27 -3.91 15 19 C -0.17 -3.31 10.02 -26.69 -0.27 -3.58 15 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.17 3.33 8.06 -52.49 -0.42 2.91 15 22 H 0.16 3.04 8.06 -52.48 -0.42 2.62 15 23 H 0.08 1.63 7.88 -51.93 -0.41 1.22 15 24 H 0.08 1.55 8.08 -51.93 -0.42 1.13 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.09 1.92 8.14 -51.93 -0.42 1.50 15 LS Contribution 241.66 15.07 3.64 3.64 Total: -1.00 -29.27 241.66 -7.03 -36.30 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.50 Total: 5.33 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.48 Total: -21.69 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 1.33 Total: -39.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.27 -7.03 -36.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236969.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.129 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds