Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00262 * 2 1 4 4 H 1.48501 * 109.46829 * 269.99221 * 3 2 1 5 5 H 1.48492 * 109.47247 * 29.99506 * 3 2 1 6 6 H 1.48499 * 109.47179 * 149.99850 * 3 2 1 7 7 C 1.37876 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00039 * 185.03168 * 7 2 1 9 9 C 1.50702 * 119.99922 * 5.03307 * 7 2 1 10 10 H 1.08991 * 109.47278 * 34.68994 * 9 7 2 11 11 C 1.50706 * 109.46835 * 274.69046 * 9 7 2 12 12 C 1.39867 * 126.04120 * 300.02589 * 11 9 7 13 13 N 1.30833 * 108.20406 * 179.97438 * 12 11 9 14 14 N 1.40094 * 108.20376 * 359.97438 * 13 12 11 15 15 H 0.97004 * 126.03230 * 180.02562 * 14 13 12 16 16 C 1.34945 * 107.92252 * 359.75853 * 14 13 12 17 17 C 1.52997 * 109.46972 * 154.69436 * 9 7 2 18 18 C 1.53003 * 117.49990 * 294.56692 * 17 9 7 19 19 C 1.53007 * 60.03019 * 252.52342 * 18 17 9 20 20 H 0.97003 * 119.99871 * 0.02562 * 1 2 3 21 21 H 1.08002 * 125.90096 * 359.95421 * 12 11 9 22 22 H 1.08003 * 126.12390 * 180.24258 * 16 14 13 23 23 H 1.09001 * 115.56415 * 80.25893 * 17 9 7 24 24 H 1.08999 * 117.49919 * 145.02049 * 18 17 9 25 25 H 1.08995 * 117.49770 * 0.02562 * 18 17 9 26 26 H 1.09001 * 117.49813 * 107.47752 * 19 18 17 27 27 H 1.09001 * 117.49379 * 252.47138 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0826 9 6 1.2552 -2.4967 -0.1134 10 1 0.3888 -2.3621 -0.7607 11 6 0.7975 -2.9341 1.2542 12 6 1.6226 -3.2046 2.3507 13 7 0.8634 -3.5544 3.3572 14 7 -0.4711 -3.5169 2.9324 15 1 -1.2482 -3.7289 3.4729 16 6 -0.4848 -3.1279 1.6403 17 6 2.1757 -3.5640 -0.7087 18 6 2.6470 -3.3660 -2.1507 19 6 1.6088 -4.4422 -1.8269 20 1 -0.4850 0.8401 -0.0004 21 1 2.7004 -3.1368 2.3642 22 1 -1.3621 -2.9977 1.0239 23 1 2.8733 -4.0262 -0.0102 24 1 3.6547 -3.6978 -2.4009 25 1 2.3017 -2.4751 -2.6752 26 1 0.5803 -4.2591 -2.1381 27 1 1.9333 -5.4821 -1.8646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236970.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = 72.569186 kcal Electronic energy + Delta-G solvation = -11737.327421 eV Core-core repulsion = 9689.633386 eV Total energy + Delta-G solvation = -2047.694035 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.69962 -38.18996 -34.77832 -32.40803 -31.56209 -28.45127 -25.24997 -22.95025 -22.60538 -21.42256 -20.43830 -18.71338 -17.71905 -16.56569 -15.90197 -15.26582 -15.05249 -14.63285 -14.17864 -13.57706 -13.29135 -13.00197 -12.72924 -12.38054 -12.15391 -11.70834 -11.54956 -11.00723 -10.90292 -10.39304 -10.32882 -10.22013 -8.89639 -7.99250 -6.06416 1.27550 1.44094 1.46228 1.54036 2.30197 2.36793 2.52299 3.29285 3.37376 4.12579 4.34300 4.42519 4.49491 4.53755 4.94282 5.00447 5.06582 5.17114 5.32428 5.45040 5.54117 5.73051 5.85692 6.04806 6.17220 6.48681 6.75302 7.04758 7.06429 7.58333 9.06372 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.026112 B = 0.017070 C = 0.012058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.063575 B = 1639.927579 C = 2321.533217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.052 0.948 9 C 0.138 3.862 10 H 0.020 0.980 11 C -0.185 4.185 12 C 0.044 3.956 13 N -0.335 5.335 14 N -0.481 5.481 15 H 0.443 0.557 16 C 0.038 3.962 17 C -0.134 4.134 18 C -0.174 4.174 19 C -0.181 4.181 20 H 0.255 0.745 21 H 0.179 0.821 22 H 0.174 0.826 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -6.318 -0.114 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.118 3.882 10 H 0.038 0.962 11 C -0.196 4.196 12 C -0.142 4.142 13 N -0.160 5.160 14 N -0.193 5.193 15 H 0.288 0.712 16 C -0.108 4.108 17 C -0.153 4.153 18 C -0.211 4.211 19 C -0.218 4.218 20 H 0.064 0.936 21 H 0.196 0.804 22 H 0.191 0.809 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.264 -6.556 1.081 6.649 hybrid contribution -0.184 1.449 -0.560 1.565 sum 0.080 -5.106 0.521 5.134 Atomic orbital electron populations 1.70047 1.06892 1.26557 1.52038 1.25571 0.95492 1.01657 0.95437 0.85845 0.78927 0.80588 0.78011 1.20223 1.21948 1.19513 1.21289 0.92985 0.91147 1.48363 0.93023 1.16709 0.93138 0.90476 0.87903 0.96151 1.20767 0.91872 1.07193 0.99752 1.23746 1.00361 0.99245 0.90805 1.76989 0.88174 1.27056 1.23760 1.46041 1.06988 1.56346 1.09882 0.71156 1.22393 0.99821 1.01822 0.86738 1.22360 1.01976 1.00058 0.90888 1.22752 0.98903 0.99906 0.99524 1.22998 0.98240 0.96143 1.04448 0.93594 0.80365 0.80890 0.89111 0.88146 0.90802 0.90191 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 13.01 21.45 0.28 -51.49 15 2 C 0.02 0.92 5.45 84.65 0.46 1.38 15 3 Si 0.94 43.54 29.54 68.60 2.03 45.57 15 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.50 -26.28 7.94 25.60 0.20 -26.07 15 8 H 0.05 2.70 7.81 -2.91 -0.02 2.68 15 9 C 0.14 6.53 2.16 -12.28 -0.03 6.50 15 10 H 0.02 1.07 7.46 -2.39 -0.02 1.06 15 11 C -0.18 -8.30 4.79 -20.14 -0.10 -8.39 15 12 C 0.04 1.86 11.43 85.24 0.97 2.84 15 13 N -0.34 -13.67 12.70 -57.03 -0.72 -14.39 15 14 N -0.48 -17.31 7.36 -57.59 -0.42 -17.73 15 15 H 0.44 12.08 8.96 -213.32 -1.91 10.17 15 16 C 0.04 1.54 11.88 83.54 0.99 2.53 15 17 C -0.13 -5.35 5.00 -10.77 -0.05 -5.40 15 18 C -0.17 -6.27 10.01 30.60 0.31 -5.96 15 19 C -0.18 -6.13 10.18 30.62 0.31 -5.82 15 20 H 0.26 13.97 8.31 -92.71 -0.77 13.20 15 21 H 0.18 6.97 8.06 -2.91 -0.02 6.95 15 22 H 0.17 6.47 8.06 -2.91 -0.02 6.44 15 23 H 0.09 3.45 7.88 -2.39 -0.02 3.43 15 24 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 25 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 26 H 0.08 2.78 8.08 -2.39 -0.02 2.76 15 27 H 0.10 2.92 8.14 -2.39 -0.02 2.90 15 Total: -1.00 -60.63 241.83 3.48 -57.15 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.75 Total: 19.29 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 3.07 Total: -38.40 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.87 Total: -83.61 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -60.63 3.48 -57.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236970.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.715 kcal (2) G-P(sol) polarization free energy of solvation -60.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds