Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46615 * 299.99502 * 3 2 1 6 6 H 1.48498 * 109.47470 * 59.98812 * 3 2 1 7 7 C 1.37875 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99546 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46544 * 179.97438 * 9 7 2 11 11 N 1.30500 * 125.65030 * 270.03833 * 10 9 7 12 12 C 1.34130 * 109.25358 * 179.97438 * 11 10 9 13 13 C 1.34668 * 108.02320 * 359.73429 * 12 11 10 14 14 N 1.35043 * 125.64782 * 90.00655 * 10 9 7 15 15 C 1.46504 * 126.39690 * 0.02723 * 14 10 9 16 16 C 1.53000 * 117.49545 * 171.38355 * 15 14 10 17 17 C 1.52997 * 60.00347 * 107.48990 * 16 15 14 18 18 H 0.96999 * 120.00214 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.47075 * 59.99910 * 9 7 2 20 20 H 1.08990 * 109.46965 * 299.99302 * 9 7 2 21 21 H 1.07998 * 125.98763 * 180.02562 * 12 11 10 22 22 H 1.08000 * 126.59370 * 180.28584 * 13 12 11 23 23 H 1.08990 * 115.56282 * 25.69578 * 15 14 10 24 24 H 1.09002 * 117.49696 * 214.98203 * 16 15 14 25 25 H 1.09002 * 117.50343 * 0.02562 * 16 15 14 26 26 H 1.08999 * 117.49685 * 252.51237 * 17 16 15 27 27 H 1.08997 * 117.50044 * 107.48590 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 7 2.7253 -4.2221 -1.0599 12 6 3.5618 -5.1999 -0.6813 13 6 3.5908 -5.2254 0.6649 14 7 2.7419 -4.2428 1.0979 15 6 2.4478 -3.9000 2.4916 16 6 2.9814 -4.8369 3.5771 17 6 3.6187 -3.4610 3.3733 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 4.1185 -5.8494 -1.3404 22 1 4.1705 -5.8942 1.2838 23 1 1.4816 -3.4267 2.6657 24 1 2.3661 -4.9799 4.4654 25 1 3.5516 -5.7080 3.2545 26 1 4.6077 -3.4272 2.9164 27 1 3.4227 -2.6988 4.1274 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 80.346950 kcal Electronic energy + Delta-G solvation = -11612.519698 eV Core-core repulsion = 9565.162933 eV Total energy + Delta-G solvation = -2047.356766 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.32842 -36.90057 -33.31317 -31.12593 -30.33436 -26.84677 -23.34086 -22.70251 -22.40135 -20.13974 -18.74298 -16.84993 -16.38642 -15.03421 -14.54852 -14.14051 -13.86664 -13.27528 -12.41292 -12.29246 -12.00777 -11.53623 -11.34240 -10.87430 -10.74360 -10.70409 -10.53396 -9.91687 -9.46364 -9.08291 -8.67057 -8.46769 -7.50947 -6.07934 -4.11126 2.72691 3.28555 3.35421 3.36588 3.42382 3.89714 4.06012 4.44636 4.74094 4.97616 5.02596 5.26898 5.39403 5.59296 5.62506 5.87618 5.97652 6.11293 6.19370 6.31711 7.02459 7.29908 7.45068 7.61138 7.87704 7.99622 8.27533 8.91332 9.04350 9.52396 11.02047 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.037416 B = 0.011948 C = 0.010375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.158620 B = 2342.998615 C = 2698.092426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.094 3.906 10 C 0.269 3.731 11 N -0.511 5.511 12 C -0.033 4.033 13 C -0.096 4.096 14 N -0.433 5.433 15 C 0.075 3.925 16 C -0.183 4.183 17 C -0.176 4.176 18 H 0.263 0.737 19 H 0.051 0.949 20 H 0.033 0.967 21 H 0.158 0.842 22 H 0.159 0.841 23 H 0.145 0.855 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -7.480 7.313 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.056 3.944 10 C 0.007 3.993 11 N -0.229 5.229 12 C -0.181 4.181 13 C -0.228 4.228 14 N -0.115 5.115 15 C -0.030 4.030 16 C -0.221 4.221 17 C -0.214 4.214 18 H 0.072 0.928 19 H 0.069 0.931 20 H 0.051 0.949 21 H 0.176 0.824 22 H 0.176 0.824 23 H 0.162 0.838 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.786 -7.148 6.620 10.854 hybrid contribution 0.819 0.592 0.847 1.319 sum 5.605 -6.556 7.467 11.408 Atomic orbital electron populations 1.69952 1.05971 1.26897 1.50472 1.24952 0.94888 0.99223 0.95061 0.86434 0.80095 0.83272 0.77656 1.19747 1.20763 1.20957 1.20959 0.93081 0.89507 1.51047 0.92504 1.17860 0.90762 0.86624 0.99201 1.24567 0.98512 0.96690 0.79514 1.70373 1.13814 1.10116 1.28564 1.22148 1.02816 1.00726 0.92404 1.22255 1.04067 0.99845 0.96615 1.44848 1.34159 1.26647 1.05860 1.21857 0.99835 1.03768 0.77514 1.23358 1.04176 0.94650 0.99905 1.23358 0.98131 0.97427 1.02496 0.92756 0.93053 0.94892 0.82446 0.82391 0.83792 0.87579 0.88382 0.88365 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.51 -14.37 9.09 -34.44 -0.31 -14.69 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 9 C 0.09 2.49 5.28 -29.03 -0.15 2.34 15 10 C 0.27 6.49 7.09 -155.41 -1.10 5.39 15 11 N -0.51 -12.38 11.25 -10.81 -0.12 -12.50 15 12 C -0.03 -0.65 11.87 -17.81 -0.21 -0.86 15 13 C -0.10 -1.73 10.86 -16.56 -0.18 -1.91 15 14 N -0.43 -8.68 3.08 -106.83 -0.33 -9.01 15 15 C 0.08 1.25 6.57 -67.93 -0.45 0.80 15 16 C -0.18 -2.21 9.99 -26.73 -0.27 -2.48 15 17 C -0.18 -2.44 10.40 -26.73 -0.28 -2.72 15 18 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 19 H 0.05 1.46 8.14 -51.93 -0.42 1.04 15 20 H 0.03 0.86 7.24 -51.93 -0.38 0.48 15 21 H 0.16 2.55 8.06 -52.49 -0.42 2.13 15 22 H 0.16 2.20 7.13 -52.49 -0.37 1.82 15 23 H 0.14 2.43 7.32 -51.93 -0.38 2.05 15 24 H 0.11 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.10 1.11 6.90 -51.93 -0.36 0.75 15 26 H 0.10 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.11 1.33 8.14 -51.93 -0.42 0.90 15 LS Contribution 240.36 15.07 3.62 3.62 Total: -1.00 -31.63 240.36 -7.31 -38.94 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -3.14 Total: 0.19 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -3.05 Total: -12.53 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.29 Total: -46.80 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.63 -7.31 -38.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.285 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds