Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46615 * 299.99502 * 3 2 1 6 6 H 1.48498 * 109.47470 * 59.98812 * 3 2 1 7 7 C 1.37875 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99546 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46544 * 179.97438 * 9 7 2 11 11 N 1.30500 * 125.65030 * 270.03833 * 10 9 7 12 12 C 1.34130 * 109.25358 * 179.97438 * 11 10 9 13 13 C 1.34668 * 108.02320 * 359.73429 * 12 11 10 14 14 N 1.35043 * 125.64782 * 90.00655 * 10 9 7 15 15 C 1.46504 * 126.39690 * 0.02723 * 14 10 9 16 16 C 1.53000 * 117.49545 * 171.38355 * 15 14 10 17 17 C 1.52997 * 60.00347 * 107.48990 * 16 15 14 18 18 H 0.96999 * 120.00214 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.47075 * 59.99910 * 9 7 2 20 20 H 1.08990 * 109.46965 * 299.99302 * 9 7 2 21 21 H 1.07998 * 125.98763 * 180.02562 * 12 11 10 22 22 H 1.08000 * 126.59370 * 180.28584 * 13 12 11 23 23 H 1.08990 * 115.56282 * 25.69578 * 15 14 10 24 24 H 1.09002 * 117.49696 * 214.98203 * 16 15 14 25 25 H 1.09002 * 117.50343 * 0.02562 * 16 15 14 26 26 H 1.08999 * 117.49685 * 252.51237 * 17 16 15 27 27 H 1.08997 * 117.50044 * 107.48590 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 7 2.7253 -4.2221 -1.0599 12 6 3.5618 -5.1999 -0.6813 13 6 3.5908 -5.2254 0.6649 14 7 2.7419 -4.2428 1.0979 15 6 2.4478 -3.9000 2.4916 16 6 2.9814 -4.8369 3.5771 17 6 3.6187 -3.4610 3.3733 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 4.1185 -5.8494 -1.3404 22 1 4.1705 -5.8942 1.2838 23 1 1.4816 -3.4267 2.6657 24 1 2.3661 -4.9799 4.4654 25 1 3.5516 -5.7080 3.2545 26 1 4.6077 -3.4272 2.9164 27 1 3.4227 -2.6988 4.1274 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 60.951848 kcal Electronic energy + Delta-G solvation = -11613.360733 eV Core-core repulsion = 9565.162933 eV Total energy + Delta-G solvation = -2048.197801 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.89948 -38.10908 -35.44708 -32.65926 -32.24332 -28.69127 -25.33299 -24.14025 -23.44032 -21.66408 -20.31168 -18.60692 -18.25674 -16.54436 -16.30362 -15.68058 -15.28685 -14.76166 -14.32001 -13.98203 -13.59799 -13.36639 -12.70736 -12.64059 -12.48906 -12.18393 -11.99050 -11.67384 -11.57107 -10.72808 -10.64446 -10.15131 -9.11836 -8.23511 -6.37036 1.20780 1.38029 1.40347 1.52897 1.94059 2.29629 2.45146 2.81833 3.07153 3.56786 3.87775 3.93427 3.94659 4.08723 4.56789 4.67800 4.71278 4.79997 4.93882 5.11946 5.16326 5.29555 5.60983 5.66920 5.99095 6.07798 6.45872 6.69577 7.31036 7.40189 8.85797 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.037416 B = 0.011948 C = 0.010375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.158620 B = 2342.998615 C = 2698.092426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.043 0.957 9 C 0.109 3.891 10 C 0.224 3.776 11 N -0.547 5.547 12 C -0.060 4.060 13 C -0.068 4.068 14 N -0.426 5.426 15 C 0.022 3.978 16 C -0.137 4.137 17 C -0.172 4.172 18 H 0.269 0.731 19 H 0.014 0.986 20 H 0.024 0.976 21 H 0.190 0.810 22 H 0.210 0.790 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -8.189 9.083 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.062 0.938 9 C 0.070 3.930 10 C -0.039 4.039 11 N -0.267 5.267 12 C -0.207 4.207 13 C -0.200 4.200 14 N -0.106 5.106 15 C -0.082 4.082 16 C -0.175 4.175 17 C -0.210 4.210 18 H 0.078 0.922 19 H 0.032 0.968 20 H 0.042 0.958 21 H 0.207 0.793 22 H 0.226 0.774 23 H 0.144 0.856 24 H 0.153 0.847 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.534 -7.858 8.418 13.240 hybrid contribution 0.288 0.723 0.332 0.846 sum 6.822 -7.136 8.749 13.191 Atomic orbital electron populations 1.70053 1.07435 1.28186 1.50740 1.25817 0.95782 1.02788 0.94244 0.85366 0.78538 0.78648 0.78287 1.19642 1.20171 1.19290 1.21104 0.92493 0.90899 1.51721 0.93835 1.17423 0.90914 0.87798 0.96866 1.23844 1.00621 0.97983 0.81416 1.70229 1.15027 1.11627 1.29817 1.22770 1.03081 1.00715 0.94163 1.23015 1.02027 0.98379 0.96607 1.44948 1.33287 1.25985 1.06411 1.22159 1.00670 1.08520 0.76876 1.23530 1.02134 0.93853 0.97939 1.23445 0.96513 0.99573 1.01447 0.92226 0.96775 0.95810 0.79315 0.77362 0.85564 0.84747 0.86554 0.88809 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 13.29 21.45 0.28 -54.87 15 2 C 0.01 0.73 5.46 84.65 0.46 1.19 15 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 7 C -0.52 -30.80 9.09 25.60 0.23 -30.57 15 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 15 9 C 0.11 6.10 5.28 29.11 0.15 6.26 15 10 C 0.22 11.14 7.09 138.13 0.98 12.12 15 11 N -0.55 -27.12 11.25 -188.13 -2.12 -29.24 15 12 C -0.06 -2.30 11.87 83.52 0.99 -1.30 15 13 C -0.07 -2.26 10.86 83.09 0.90 -1.36 15 14 N -0.43 -16.77 3.08 -491.89 -1.52 -18.29 15 15 C 0.02 0.69 6.57 44.99 0.30 0.99 15 16 C -0.14 -2.74 9.99 30.59 0.31 -2.43 15 17 C -0.17 -4.31 10.40 30.60 0.32 -3.99 15 18 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 19 H 0.01 0.87 8.14 -2.39 -0.02 0.85 15 20 H 0.02 1.33 7.24 -2.39 -0.02 1.31 15 21 H 0.19 5.69 8.06 -2.91 -0.02 5.66 15 22 H 0.21 4.63 7.13 -2.91 -0.02 4.61 15 23 H 0.13 4.39 7.32 -2.39 -0.02 4.37 15 24 H 0.13 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.12 1.95 6.90 -2.39 -0.02 1.93 15 26 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 27 H 0.12 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -71.19 240.36 4.47 -66.71 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.15 Total: 8.12 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.64 Total: -19.10 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -3.35 Total: -102.40 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.19 4.47 -66.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.666 kcal (2) G-P(sol) polarization free energy of solvation -71.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds