Wall clock time and date at job start Mon Mar 30 2020 01:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.34669 * 126.59014 * 85.02209 * 10 9 7 12 12 N 1.34129 * 108.02553 * 179.97438 * 11 10 9 13 13 C 1.30506 * 109.25095 * 0.02562 * 12 11 10 14 14 N 1.35045 * 108.69873 * 359.76559 * 13 12 11 15 15 C 1.46501 * 126.39696 * 180.26486 * 14 13 12 16 16 C 1.53003 * 117.49891 * 8.87315 * 15 14 13 17 17 C 1.52996 * 117.49873 * 300.21583 * 15 14 13 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 20 20 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 21 21 H 1.08001 * 125.99374 * 359.96597 * 11 10 9 22 22 H 1.08000 * 125.64797 * 180.02562 * 13 12 11 23 23 H 1.08996 * 115.55226 * 154.54223 * 15 14 13 24 24 H 1.09006 * 117.49765 * 359.97438 * 16 15 14 25 25 H 1.08994 * 117.50291 * 145.01342 * 16 15 14 26 26 H 1.09000 * 117.49728 * 214.97796 * 17 15 14 27 27 H 1.08998 * 117.50281 * 359.97168 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 6 4.1884 -3.4009 -1.0965 12 7 4.6495 -4.5880 -0.6755 13 6 4.7667 -4.5676 0.6242 14 7 4.3849 -3.3530 1.0743 15 6 4.3689 -2.9089 2.4703 16 6 5.0180 -3.8243 3.5104 17 6 3.4941 -3.6925 3.4509 18 1 -0.4849 0.8401 0.0041 19 1 3.8711 -0.6782 -0.9024 20 1 3.8785 -0.6825 0.8776 21 1 3.9916 -3.1240 -2.1218 22 1 5.1156 -5.3852 1.2376 23 1 4.4560 -1.8331 2.6225 24 1 5.4566 -4.7572 3.1560 25 1 5.5319 -3.3508 4.3468 26 1 3.0061 -3.1323 4.2484 27 1 2.9302 -4.5382 3.0574 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239636.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:34 Heat of formation + Delta-G solvation = 83.386406 kcal Electronic energy + Delta-G solvation = -11614.472166 eV Core-core repulsion = 9567.247201 eV Total energy + Delta-G solvation = -2047.224965 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45397 -36.98315 -33.40557 -31.52455 -30.52952 -26.92959 -23.22422 -22.56690 -22.45854 -20.33068 -18.79135 -16.92976 -16.76536 -15.31508 -14.50065 -14.11776 -13.62645 -13.39246 -13.01634 -12.47950 -12.01321 -11.73741 -11.57922 -10.98334 -10.74673 -10.67958 -10.52492 -10.14658 -9.49769 -9.24774 -8.70314 -8.64187 -7.47107 -6.12764 -4.12584 2.70175 3.20600 3.25125 3.31755 3.32098 3.84277 3.90264 4.34864 4.64893 4.88822 4.93387 5.16086 5.19506 5.52670 5.54926 5.83076 5.91785 6.05355 6.22176 6.44117 6.69455 6.85884 7.34924 7.46078 7.61245 7.87438 8.44104 8.74028 8.93042 9.46177 11.00171 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.012204 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.255261 B = 2293.686689 C = 2624.451043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.052 3.948 10 C 0.048 3.952 11 C -0.056 4.056 12 N -0.494 5.494 13 C 0.144 3.856 14 N -0.430 5.430 15 C 0.071 3.929 16 C -0.181 4.181 17 C -0.174 4.174 18 H 0.265 0.735 19 H 0.038 0.962 20 H 0.022 0.978 21 H 0.165 0.835 22 H 0.191 0.809 23 H 0.139 0.861 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -3.897 6.819 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.092 0.908 9 C 0.014 3.986 10 C -0.067 4.067 11 C -0.202 4.202 12 N -0.213 5.213 13 C -0.137 4.137 14 N -0.114 5.114 15 C -0.034 4.034 16 C -0.219 4.219 17 C -0.212 4.212 18 H 0.075 0.925 19 H 0.056 0.944 20 H 0.041 0.959 21 H 0.182 0.818 22 H 0.208 0.792 23 H 0.157 0.843 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.283 -4.417 6.412 12.116 hybrid contribution 0.027 1.519 0.565 1.621 sum 9.310 -2.897 6.978 11.990 Atomic orbital electron populations 1.69899 1.06238 1.27015 1.50378 1.24974 0.94744 0.98908 0.94474 0.86829 0.80203 0.83746 0.78857 1.19894 1.21167 1.19141 1.20899 0.88053 0.94729 1.51475 0.90825 1.18273 0.97363 0.85425 0.97567 1.21789 1.01734 0.97649 0.85496 1.21885 1.09073 0.90430 0.98814 1.70145 1.18938 1.23317 1.08876 1.24443 1.08098 0.89199 0.91924 1.44680 1.48819 1.12267 1.05597 1.21810 1.06212 0.98189 0.77225 1.23392 0.96464 1.01531 1.00523 1.23403 0.92978 1.03197 1.01623 0.92517 0.94384 0.95947 0.81817 0.79208 0.84308 0.88158 0.87443 0.87368 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.34 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 15 7 C -0.51 -14.42 9.65 -34.44 -0.33 -14.75 15 8 H 0.07 2.32 7.98 -52.49 -0.42 1.90 15 9 C 0.05 1.24 4.38 -29.04 -0.13 1.11 15 10 C 0.05 1.06 6.14 -81.60 -0.50 0.56 15 11 C -0.06 -1.24 11.79 -17.81 -0.21 -1.45 15 12 N -0.49 -10.37 11.25 -14.66 -0.16 -10.54 15 13 C 0.14 2.60 11.88 -90.37 -1.07 1.53 15 14 N -0.43 -8.18 3.09 -106.92 -0.33 -8.51 15 15 C 0.07 1.09 6.62 -67.93 -0.45 0.64 15 16 C -0.18 -2.00 9.99 -26.69 -0.27 -2.27 15 17 C -0.17 -2.29 10.40 -26.70 -0.28 -2.57 15 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 19 H 0.04 0.88 7.57 -51.93 -0.39 0.49 15 20 H 0.02 0.51 6.31 -51.93 -0.33 0.19 15 21 H 0.16 3.36 8.06 -52.49 -0.42 2.94 15 22 H 0.19 2.61 7.03 -52.49 -0.37 2.24 15 23 H 0.14 2.15 7.36 -51.93 -0.38 1.77 15 24 H 0.10 1.01 6.85 -51.93 -0.36 0.65 15 25 H 0.11 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.11 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.10 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 236.73 15.07 3.57 3.57 Total: -1.00 -31.97 236.73 -7.26 -39.23 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.10 Total: 1.74 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -3.34 Total: -15.28 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.28 Total: -45.39 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.97 -7.26 -39.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239636.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.618 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds