Wall clock time and date at job start Mon Mar 30 2020 01:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.34669 * 126.59014 * 85.02209 * 10 9 7 12 12 N 1.34129 * 108.02553 * 179.97438 * 11 10 9 13 13 C 1.30506 * 109.25095 * 0.02562 * 12 11 10 14 14 N 1.35045 * 108.69873 * 359.76559 * 13 12 11 15 15 C 1.46501 * 126.39696 * 180.26486 * 14 13 12 16 16 C 1.53003 * 117.49891 * 8.87315 * 15 14 13 17 17 C 1.52996 * 117.49873 * 300.21583 * 15 14 13 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 20 20 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 21 21 H 1.08001 * 125.99374 * 359.96597 * 11 10 9 22 22 H 1.08000 * 125.64797 * 180.02562 * 13 12 11 23 23 H 1.08996 * 115.55226 * 154.54223 * 15 14 13 24 24 H 1.09006 * 117.49765 * 359.97438 * 16 15 14 25 25 H 1.08994 * 117.50291 * 145.01342 * 16 15 14 26 26 H 1.09000 * 117.49728 * 214.97796 * 17 15 14 27 27 H 1.08998 * 117.50281 * 359.97168 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 6 4.1884 -3.4009 -1.0965 12 7 4.6495 -4.5880 -0.6755 13 6 4.7667 -4.5676 0.6242 14 7 4.3849 -3.3530 1.0743 15 6 4.3689 -2.9089 2.4703 16 6 5.0180 -3.8243 3.5104 17 6 3.4941 -3.6925 3.4509 18 1 -0.4849 0.8401 0.0041 19 1 3.8711 -0.6782 -0.9024 20 1 3.8785 -0.6825 0.8776 21 1 3.9916 -3.1240 -2.1218 22 1 5.1156 -5.3852 1.2376 23 1 4.4560 -1.8331 2.6225 24 1 5.4566 -4.7572 3.1560 25 1 5.5319 -3.3508 4.3468 26 1 3.0061 -3.1323 4.2484 27 1 2.9302 -4.5382 3.0574 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239636.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:34 Heat of formation + Delta-G solvation = 63.794859 kcal Electronic energy + Delta-G solvation = -11615.321720 eV Core-core repulsion = 9567.247201 eV Total energy + Delta-G solvation = -2048.074518 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.96092 -38.11123 -35.45446 -33.24931 -32.20123 -28.74880 -24.78055 -24.27269 -23.44166 -21.84086 -20.27307 -19.03207 -18.18803 -16.54400 -16.34160 -15.75461 -15.05003 -14.96536 -14.61547 -14.18660 -13.78994 -13.38607 -12.65384 -12.49353 -12.47718 -12.21181 -11.97108 -11.69841 -11.56754 -10.90021 -10.79007 -10.07877 -9.12915 -8.31557 -6.38265 1.19694 1.37380 1.38677 1.49621 1.88849 2.25368 2.33648 2.81236 3.02422 3.55533 3.81264 3.87341 3.91755 4.08452 4.51581 4.64357 4.67122 4.78751 4.91672 4.95711 5.12037 5.13303 5.47870 5.65193 5.85915 6.21487 6.47092 6.66882 7.17647 7.25163 8.85247 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.012204 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.255261 B = 2293.686689 C = 2624.451043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.520 4.520 8 H 0.020 0.980 9 C 0.063 3.937 10 C 0.014 3.986 11 C -0.071 4.071 12 N -0.525 5.525 13 C 0.164 3.836 14 N -0.428 5.428 15 C 0.023 3.977 16 C -0.134 4.134 17 C -0.180 4.180 18 H 0.269 0.731 19 H 0.045 0.955 20 H 0.035 0.965 21 H 0.163 0.837 22 H 0.238 0.762 23 H 0.133 0.867 24 H 0.118 0.882 25 H 0.138 0.862 26 H 0.118 0.882 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.521 -3.692 8.434 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.166 1.166 7 C -0.558 4.558 8 H 0.038 0.962 9 C 0.025 3.975 10 C -0.102 4.102 11 C -0.217 4.217 12 N -0.244 5.244 13 C -0.117 4.117 14 N -0.110 5.110 15 C -0.081 4.081 16 C -0.171 4.171 17 C -0.218 4.218 18 H 0.078 0.922 19 H 0.063 0.937 20 H 0.053 0.947 21 H 0.181 0.819 22 H 0.254 0.746 23 H 0.151 0.849 24 H 0.136 0.864 25 H 0.157 0.843 26 H 0.137 0.863 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.567 -4.221 8.048 14.710 hybrid contribution -0.731 1.310 0.114 1.505 sum 10.836 -2.910 8.162 13.875 Atomic orbital electron populations 1.70063 1.08429 1.28409 1.51872 1.25966 0.95594 1.03353 0.93698 0.85627 0.79500 0.77838 0.79519 1.18967 1.20696 1.16559 1.21024 0.90500 0.92804 1.51444 0.96205 1.18043 0.94150 0.87174 0.98179 1.21579 1.03990 0.97578 0.87045 1.22044 1.09335 0.91147 0.99137 1.70139 1.20600 1.22983 1.10642 1.25338 1.05227 0.89592 0.91573 1.44846 1.47716 1.12023 1.06443 1.22198 1.10581 0.99113 0.76186 1.23570 0.94531 1.00582 0.98407 1.23470 0.95008 1.02420 1.00916 0.92230 0.93717 0.94723 0.81920 0.74604 0.84896 0.86390 0.84350 0.86340 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.96 21.45 0.30 -58.67 15 2 C 0.01 0.65 5.47 84.66 0.46 1.11 15 3 Si 0.95 42.59 27.47 68.60 1.88 44.47 15 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 15 7 C -0.52 -30.13 9.65 25.60 0.25 -29.88 15 8 H 0.02 1.31 7.98 -2.91 -0.02 1.29 15 9 C 0.06 2.99 4.38 29.10 0.13 3.12 15 10 C 0.01 0.62 6.14 40.95 0.25 0.87 15 11 C -0.07 -3.16 11.79 83.52 0.98 -2.17 15 12 N -0.52 -21.66 11.25 -200.30 -2.25 -23.91 15 13 C 0.16 5.58 11.88 180.26 2.14 7.72 15 14 N -0.43 -15.76 3.09 -492.18 -1.52 -17.28 15 15 C 0.02 0.66 6.62 44.99 0.30 0.96 15 16 C -0.13 -2.36 9.99 30.62 0.31 -2.05 15 17 C -0.18 -4.36 10.40 30.62 0.32 -4.04 15 18 H 0.27 15.49 8.31 -92.71 -0.77 14.72 15 19 H 0.04 2.04 7.57 -2.39 -0.02 2.03 15 20 H 0.03 1.55 6.31 -2.39 -0.02 1.53 15 21 H 0.16 6.93 8.06 -2.91 -0.02 6.91 15 22 H 0.24 5.46 7.03 -2.91 -0.02 5.44 15 23 H 0.13 3.93 7.36 -2.39 -0.02 3.91 15 24 H 0.12 1.71 6.85 -2.38 -0.02 1.69 15 25 H 0.14 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.12 2.57 8.14 -2.39 -0.02 2.55 15 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -71.81 236.73 4.65 -67.16 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.10 Total: 12.60 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 5.14 Total: -24.36 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.47 Total: -99.86 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Total: -71.81 4.65 -67.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239636.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.952 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds