Wall clock time and date at job start Mon Mar 30 2020 01:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48506 * 109.47393 * 85.01945 * 3 2 1 5 5 H 1.48497 * 109.47221 * 325.01776 * 3 2 1 6 6 H 1.48504 * 109.46961 * 205.01426 * 3 2 1 7 7 C 1.39696 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99753 * 189.33330 * 7 2 1 9 9 C 1.41595 * 119.99846 * 9.34095 * 7 2 1 10 10 C 1.41883 * 126.55944 * 10.18976 * 9 7 2 11 11 N 1.30315 * 108.04840 * 179.81553 * 10 9 7 12 12 N 1.39881 * 109.22814 * 0.44961 * 11 10 9 13 13 H 0.96997 * 125.67303 * 179.69340 * 12 11 10 14 14 C 1.34502 * 108.64799 * 359.70848 * 12 11 10 15 15 C 1.50702 * 126.40460 * 179.97438 * 14 12 11 16 16 C 1.53780 * 113.61492 * 37.52092 * 15 14 12 17 17 C 1.53783 * 87.07901 * 220.02255 * 16 15 14 18 18 C 1.53779 * 87.08453 * 25.43396 * 17 16 15 19 19 H 0.97006 * 120.00035 * 359.97438 * 1 2 3 20 20 H 1.08000 * 125.97530 * 359.97438 * 10 9 7 21 21 H 1.08998 * 112.84789 * 168.83222 * 15 14 12 22 22 H 1.08995 * 113.61353 * 334.56722 * 16 15 14 23 23 H 1.09001 * 113.61398 * 105.47341 * 16 15 14 24 24 H 1.09000 * 113.61397 * 270.87935 * 17 16 15 25 25 H 1.09001 * 113.69066 * 140.00107 * 17 16 15 26 26 H 1.08997 * 113.61253 * 220.02423 * 18 17 16 27 27 H 1.08998 * 113.61416 * 89.11796 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.3865 2.1073 1.3948 5 1 1.4983 2.6200 -0.8027 6 1 3.5905 1.4121 -0.5920 7 6 2.0088 -1.2098 0.0005 8 1 3.0780 -1.2159 0.1522 9 6 1.3149 -2.4280 -0.1979 10 6 -0.0359 -2.5743 -0.6066 11 7 -0.3003 -3.8483 -0.6783 12 7 0.8383 -4.5761 -0.3173 13 1 0.9045 -5.5433 -0.2841 14 6 1.8260 -3.7117 -0.0235 15 6 3.2241 -4.0661 0.4134 16 6 3.7939 -5.3080 -0.2923 17 6 4.3966 -5.7059 1.0654 18 6 3.2743 -4.8806 1.7168 19 1 -0.4850 0.8401 0.0004 20 1 -0.7239 -1.7704 -0.8232 21 1 3.8992 -3.2103 0.4070 22 1 3.0285 -5.9971 -0.6490 23 1 4.5416 -5.0748 -1.0504 24 1 5.3933 -5.2994 1.2367 25 1 4.3328 -6.7733 1.2769 26 1 3.6026 -4.3024 2.5806 27 1 2.3669 -5.4529 1.9093 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254066.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:05 Heat of formation + Delta-G solvation = 75.044540 kcal Electronic energy + Delta-G solvation = -11703.845888 eV Core-core repulsion = 9656.259192 eV Total energy + Delta-G solvation = -2047.586696 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.54334 -37.48253 -33.36375 -29.70875 -29.30876 -25.53599 -25.12473 -23.73873 -20.29091 -19.19539 -18.61770 -16.96395 -15.41239 -15.02649 -14.65104 -13.46420 -13.06686 -12.81472 -12.10031 -12.03785 -11.85468 -11.52082 -11.17044 -10.98593 -10.72313 -10.15965 -9.96752 -9.92760 -9.53646 -9.14887 -8.83970 -7.81762 -7.09484 -6.41492 -3.91993 3.06899 3.22905 3.27296 3.44893 4.17085 4.41018 4.45898 5.11284 5.13480 5.24797 5.46038 5.80346 5.93607 6.12412 6.20375 6.24392 6.44408 6.45654 6.65583 6.80838 6.95215 7.36038 7.66323 7.68406 8.16157 8.64381 8.86477 9.11290 9.21032 9.52840 10.60872 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040303 B = 0.012639 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.577821 B = 2214.917861 C = 2756.622732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.438 4.438 8 H 0.068 0.932 9 C -0.009 4.009 10 C 0.033 3.967 11 N -0.339 5.339 12 N -0.497 5.497 13 H 0.410 0.590 14 C -0.080 4.080 15 C -0.005 4.005 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.136 4.136 19 H 0.272 0.728 20 H 0.190 0.810 21 H 0.100 0.900 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 -5.053 1.152 7.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.087 0.913 9 C -0.019 4.019 10 C -0.154 4.154 11 N -0.163 5.163 12 N -0.209 5.209 13 H 0.249 0.751 14 C -0.203 4.203 15 C -0.025 4.025 16 C -0.178 4.178 17 C -0.181 4.181 18 C -0.174 4.174 19 H 0.083 0.917 20 H 0.207 0.793 21 H 0.118 0.882 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.949 -5.658 0.889 7.569 hybrid contribution 0.999 0.964 0.257 1.412 sum 5.948 -4.693 1.146 7.663 Atomic orbital electron populations 1.69645 1.07078 1.27951 1.42416 1.25621 0.94739 1.00456 0.93497 0.86304 0.80220 0.81545 0.78483 1.20171 1.20575 1.19092 1.18700 0.94495 0.89382 1.44662 0.91343 1.17949 0.92476 0.91195 1.00311 1.24598 0.98119 0.92052 1.00637 1.76506 1.07817 1.06873 1.25076 1.45129 1.08747 1.06608 1.60417 0.75124 1.20472 0.91675 0.90475 1.17658 1.20555 0.92174 0.95866 0.93892 1.23006 0.99786 0.98696 0.96324 1.22838 0.98514 0.99315 0.97441 1.23010 0.97913 0.98445 0.98069 0.91706 0.79322 0.88217 0.91179 0.91895 0.90512 0.92286 0.91791 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.55 10.62 55.54 0.59 -21.96 15 2 C 0.07 1.77 5.45 -17.35 -0.09 1.67 15 3 Si 0.91 19.71 29.57 -169.99 -5.03 14.68 15 4 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.44 -11.92 9.14 -37.76 -0.35 -12.26 15 8 H 0.07 1.78 7.09 -52.49 -0.37 1.41 15 9 C -0.01 -0.26 5.88 -106.84 -0.63 -0.88 15 10 C 0.03 0.91 10.86 -16.80 -0.18 0.72 15 11 N -0.34 -8.70 12.60 30.97 0.39 -8.31 15 12 N -0.50 -11.24 7.10 34.13 0.24 -11.00 15 13 H 0.41 7.77 8.31 -182.77 -1.52 6.25 15 14 C -0.08 -1.89 6.39 -81.04 -0.52 -2.40 15 15 C 0.00 -0.09 4.08 -90.96 -0.37 -0.46 15 16 C -0.14 -2.20 7.62 -25.92 -0.20 -2.40 15 17 C -0.14 -1.96 8.08 -25.92 -0.21 -2.17 15 18 C -0.14 -2.24 7.63 -25.92 -0.20 -2.44 15 19 H 0.27 6.75 8.30 -40.82 -0.34 6.41 15 20 H 0.19 5.25 6.13 -52.49 -0.32 4.93 15 21 H 0.10 1.98 7.27 -51.93 -0.38 1.60 15 22 H 0.07 1.08 7.30 -51.93 -0.38 0.70 15 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.07 1.21 8.09 -51.93 -0.42 0.79 15 LS Contribution 231.42 15.07 3.49 3.49 Total: -1.00 -28.84 231.42 -7.28 -36.11 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.22 Total: 7.60 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.74 Total: -20.62 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.22 Total: -41.27 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.84 -7.28 -36.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254066.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.159 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds