Wall clock time and date at job start Mon Mar 30 2020 01:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48506 * 109.47393 * 85.01945 * 3 2 1 5 5 H 1.48497 * 109.47221 * 325.01776 * 3 2 1 6 6 H 1.48504 * 109.46961 * 205.01426 * 3 2 1 7 7 C 1.39696 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99753 * 189.33330 * 7 2 1 9 9 C 1.41595 * 119.99846 * 9.34095 * 7 2 1 10 10 C 1.41883 * 126.55944 * 10.18976 * 9 7 2 11 11 N 1.30315 * 108.04840 * 179.81553 * 10 9 7 12 12 N 1.39881 * 109.22814 * 0.44961 * 11 10 9 13 13 H 0.96997 * 125.67303 * 179.69340 * 12 11 10 14 14 C 1.34502 * 108.64799 * 359.70848 * 12 11 10 15 15 C 1.50702 * 126.40460 * 179.97438 * 14 12 11 16 16 C 1.53780 * 113.61492 * 37.52092 * 15 14 12 17 17 C 1.53783 * 87.07901 * 220.02255 * 16 15 14 18 18 C 1.53779 * 87.08453 * 25.43396 * 17 16 15 19 19 H 0.97006 * 120.00035 * 359.97438 * 1 2 3 20 20 H 1.08000 * 125.97530 * 359.97438 * 10 9 7 21 21 H 1.08998 * 112.84789 * 168.83222 * 15 14 12 22 22 H 1.08995 * 113.61353 * 334.56722 * 16 15 14 23 23 H 1.09001 * 113.61398 * 105.47341 * 16 15 14 24 24 H 1.09000 * 113.61397 * 270.87935 * 17 16 15 25 25 H 1.09001 * 113.69066 * 140.00107 * 17 16 15 26 26 H 1.08997 * 113.61253 * 220.02423 * 18 17 16 27 27 H 1.08998 * 113.61416 * 89.11796 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.3865 2.1073 1.3948 5 1 1.4983 2.6200 -0.8027 6 1 3.5905 1.4121 -0.5920 7 6 2.0088 -1.2098 0.0005 8 1 3.0780 -1.2159 0.1522 9 6 1.3149 -2.4280 -0.1979 10 6 -0.0359 -2.5743 -0.6066 11 7 -0.3003 -3.8483 -0.6783 12 7 0.8383 -4.5761 -0.3173 13 1 0.9045 -5.5433 -0.2841 14 6 1.8260 -3.7117 -0.0235 15 6 3.2241 -4.0661 0.4134 16 6 3.7939 -5.3080 -0.2923 17 6 4.3966 -5.7059 1.0654 18 6 3.2743 -4.8806 1.7168 19 1 -0.4850 0.8401 0.0004 20 1 -0.7239 -1.7704 -0.8232 21 1 3.8992 -3.2103 0.4070 22 1 3.0285 -5.9971 -0.6490 23 1 4.5416 -5.0748 -1.0504 24 1 5.3933 -5.2994 1.2367 25 1 4.3328 -6.7733 1.2769 26 1 3.6026 -4.3024 2.5806 27 1 2.3669 -5.4529 1.9093 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254066.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:05 Heat of formation + Delta-G solvation = 57.270954 kcal Electronic energy + Delta-G solvation = -11704.616608 eV Core-core repulsion = 9656.259192 eV Total energy + Delta-G solvation = -2048.357416 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.39786 -38.94625 -35.32258 -31.65080 -31.23610 -27.30305 -26.40276 -25.44486 -22.14273 -21.09891 -20.15863 -18.76862 -17.22948 -16.65304 -16.18882 -15.14023 -14.96435 -14.64159 -13.74713 -13.62617 -13.31522 -12.96146 -12.91992 -12.75180 -12.45299 -11.89995 -11.40944 -11.24346 -11.11021 -10.99926 -10.83829 -9.76464 -9.08734 -8.34626 -5.94293 1.30198 1.45857 1.56721 1.59609 2.34776 2.40463 2.62687 3.52390 3.84534 3.92238 3.95458 4.28150 4.64728 4.79123 4.85421 4.87040 4.99435 5.12582 5.16599 5.26222 5.33682 5.59118 5.71580 5.79327 6.11016 6.59821 6.97451 7.18639 7.20989 7.53160 8.69522 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040303 B = 0.012639 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.577821 B = 2214.917861 C = 2756.622732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.020 3.980 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.468 4.468 8 H 0.070 0.930 9 C -0.063 4.063 10 C 0.007 3.993 11 N -0.355 5.355 12 N -0.476 5.476 13 H 0.429 0.571 14 C -0.051 4.051 15 C -0.028 4.028 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.135 4.135 19 H 0.276 0.724 20 H 0.175 0.825 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -6.169 1.593 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.503 4.503 8 H 0.088 0.912 9 C -0.072 4.072 10 C -0.178 4.178 11 N -0.180 5.180 12 N -0.189 5.189 13 H 0.272 0.728 14 C -0.177 4.177 15 C -0.048 4.048 16 C -0.171 4.171 17 C -0.157 4.157 18 C -0.173 4.173 19 H 0.087 0.913 20 H 0.192 0.808 21 H 0.109 0.891 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.895 -6.805 1.325 9.777 hybrid contribution 0.403 1.142 0.135 1.218 sum 7.298 -5.663 1.460 9.352 Atomic orbital electron populations 1.69744 1.08467 1.28939 1.43336 1.26477 0.95581 1.03770 0.92907 0.85199 0.78856 0.76927 0.78640 1.19520 1.20012 1.18516 1.18935 0.94688 0.90341 1.46308 0.91209 1.18383 0.93021 0.92957 1.02887 1.24440 0.98575 0.92413 1.02359 1.76438 1.08855 1.06398 1.26332 1.45190 1.07869 1.07627 1.58208 0.72821 1.21191 0.93299 0.89559 1.13660 1.20864 0.89331 0.97477 0.97140 1.22982 1.00046 0.96315 0.97743 1.22755 0.98033 1.00467 0.94486 1.22988 0.99306 0.98318 0.96658 0.91349 0.80812 0.89150 0.90714 0.90895 0.88819 0.89728 0.91548 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.42 10.62 21.79 0.23 -48.19 15 2 C 0.02 1.05 5.45 85.16 0.46 1.52 15 3 Si 0.98 40.90 29.57 68.60 2.03 42.92 15 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.28 -11.10 7.11 99.48 0.71 -10.40 15 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.47 -26.07 9.14 23.45 0.21 -25.86 15 8 H 0.07 3.70 7.09 -2.91 -0.02 3.68 15 9 C -0.06 -3.48 5.88 -21.30 -0.13 -3.61 15 10 C 0.01 0.40 10.86 85.82 0.93 1.33 15 11 N -0.35 -18.40 12.60 -55.94 -0.71 -19.10 15 12 N -0.48 -21.08 7.10 -45.94 -0.33 -21.40 15 13 H 0.43 15.33 8.31 -213.46 -1.77 13.55 15 14 C -0.05 -2.38 6.39 42.40 0.27 -2.11 15 15 C -0.03 -1.01 4.08 -11.01 -0.04 -1.06 15 16 C -0.13 -3.70 7.62 31.12 0.24 -3.47 15 17 C -0.12 -2.74 8.08 31.12 0.25 -2.48 15 18 C -0.13 -4.03 7.63 31.12 0.24 -3.79 15 19 H 0.28 14.11 8.30 -92.70 -0.77 13.34 15 20 H 0.18 10.23 6.13 -2.91 -0.02 10.21 15 21 H 0.09 3.49 7.27 -2.39 -0.02 3.48 15 22 H 0.07 2.01 7.30 -2.39 -0.02 2.00 15 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.07 2.12 8.09 -2.39 -0.02 2.10 15 Total: -1.00 -63.18 231.42 3.07 -60.11 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.59 Total: 25.20 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 2.44 Total: -39.53 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -0.80 Total: -88.70 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -63.18 3.07 -60.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254066.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.379 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds