Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.39281 * 126.40384 * 2 1 4 4 C 1.41588 * 126.55873 * 0.03888 * 3 2 1 5 5 H 1.08001 * 120.00247 * 0.25578 * 4 3 2 6 6 C 1.39695 * 120.00045 * 180.24773 * 4 3 2 7 7 N 1.31029 * 119.99942 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00290 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47159 * 60.00242 * 8 6 4 10 10 H 1.48497 * 109.47188 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47013 * 300.00132 * 8 6 4 12 12 C 1.41880 * 106.87868 * 180.27173 * 3 2 1 13 13 N 1.30322 * 108.05177 * 359.76997 * 12 3 2 14 14 N 1.34502 * 126.40250 * 179.87719 * 2 1 3 15 15 C 1.46502 * 125.67830 * 359.97438 * 14 2 1 16 16 C 1.53000 * 117.49632 * 119.71588 * 15 14 2 17 17 C 1.53002 * 60.02940 * 107.47827 * 16 15 14 18 18 H 1.08997 * 109.46752 * 270.12050 * 1 2 3 19 19 H 1.09001 * 109.46711 * 30.11983 * 1 2 3 20 20 H 1.08999 * 109.46651 * 150.12069 * 1 2 3 21 21 H 0.96997 * 120.00604 * 179.97438 * 7 6 4 22 22 H 1.08001 * 125.97491 * 179.74245 * 12 3 2 23 23 H 1.08999 * 115.56079 * 334.03062 * 15 14 2 24 24 H 1.09002 * 117.49833 * 214.97932 * 16 15 14 25 25 H 1.09002 * 117.49953 * 359.97438 * 16 15 14 26 26 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 27 27 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3337 1.1210 0.0000 4 6 1.9189 2.4747 0.0008 5 1 0.8664 2.7171 0.0056 6 6 2.8709 3.4970 -0.0046 7 7 4.1478 3.2031 -0.0108 8 14 2.3236 5.2831 -0.0028 9 1 1.5155 5.5520 1.2136 10 1 3.5172 6.1665 -0.0099 11 1 1.5032 5.5506 -1.2114 12 6 3.6709 0.6468 -0.0064 13 7 3.6374 -0.6560 -0.0050 14 7 2.3053 -1.0826 0.0023 15 6 1.8546 -2.4765 0.0058 16 6 2.2769 -3.3585 -1.1709 17 6 2.9156 -3.5618 0.2045 18 1 -0.3633 0.0022 1.0277 19 1 -0.3633 0.8889 -0.5157 20 1 -0.3632 -0.8911 -0.5120 21 1 4.8089 3.9129 -0.0149 22 1 4.5610 1.2586 -0.0120 23 1 0.8689 -2.6510 0.4372 24 1 1.5691 -4.1132 -1.5136 25 1 2.8898 -2.9014 -1.9479 26 1 2.6280 -4.4503 0.7666 27 1 3.9486 -3.2382 0.3325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265306.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = 90.698075 kcal Electronic energy + Delta-G solvation = -11626.202617 eV Core-core repulsion = 9579.294709 eV Total energy + Delta-G solvation = -2046.907907 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39780 -36.29233 -33.27700 -31.08794 -29.32090 -26.59571 -24.06771 -22.13284 -22.02136 -19.33321 -18.18753 -16.64184 -15.63389 -14.74716 -14.30907 -13.48741 -13.21796 -12.71430 -12.19141 -11.89795 -11.74260 -11.20817 -11.13803 -11.03928 -10.71686 -10.37988 -10.28713 -10.15042 -9.86922 -9.15288 -8.76112 -7.56778 -7.04945 -6.40215 -3.93323 3.04441 3.21266 3.24290 3.34561 3.82513 4.15932 4.28991 4.45609 5.09786 5.20331 5.35430 5.60094 5.89367 5.92627 6.16082 6.23600 6.34873 6.50662 6.50735 6.78957 6.91334 7.33879 7.68168 7.70951 8.18867 8.60214 8.70334 9.10595 9.20292 9.55835 10.59464 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.069807 B = 0.010266 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.007319 B = 2726.911189 C = 3042.707873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.097 4.097 3 C -0.015 4.015 4 C -0.433 4.433 5 H 0.069 0.931 6 C 0.066 3.934 7 N -0.843 5.843 8 Si 0.915 3.085 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.031 3.969 13 N -0.338 5.338 14 N -0.364 5.364 15 C 0.110 3.890 16 C -0.194 4.194 17 C -0.175 4.175 18 H 0.045 0.955 19 H 0.065 0.935 20 H 0.039 0.961 21 H 0.274 0.726 22 H 0.203 0.797 23 H 0.124 0.876 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -5.937 -0.248 7.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.217 4.217 3 C -0.025 4.025 4 C -0.467 4.467 5 H 0.087 0.913 6 C -0.144 4.144 7 N -0.475 5.475 8 Si 0.741 3.259 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.156 4.156 13 N -0.160 5.160 14 N -0.152 5.152 15 C 0.004 3.996 16 C -0.233 4.233 17 C -0.213 4.213 18 H 0.063 0.937 19 H 0.084 0.916 20 H 0.058 0.942 21 H 0.084 0.916 22 H 0.219 0.781 23 H 0.141 0.859 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.176 -6.921 -0.241 7.619 hybrid contribution -0.697 1.568 -0.022 1.716 sum -3.872 -5.353 -0.263 6.612 Atomic orbital electron populations 1.19800 0.90041 1.00726 1.00016 1.20744 0.92551 0.86936 1.21499 1.17957 0.90331 0.92377 1.01805 1.18706 0.93495 0.89064 1.45478 0.91320 1.25640 0.94466 1.00870 0.93470 1.69442 1.01084 1.34027 1.42944 0.86272 0.78458 0.81895 0.79283 1.19546 1.20741 1.19557 1.25087 1.00416 0.89467 1.00616 1.76520 0.96803 1.15553 1.27101 1.46698 1.03802 1.02075 1.62578 1.21215 0.97405 0.78259 1.02753 1.23398 1.04238 1.02961 0.92721 1.23167 0.99875 0.99029 0.99245 0.93654 0.91567 0.94183 0.91552 0.78082 0.85859 0.88738 0.88611 0.88717 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 9.81 36.01 0.35 -0.59 15 2 C -0.10 -2.41 7.06 -81.03 -0.57 -2.98 15 3 C -0.02 -0.42 5.93 -106.84 -0.63 -1.06 15 4 C -0.43 -11.96 9.13 -37.76 -0.34 -12.31 15 5 H 0.07 1.81 7.34 -52.49 -0.39 1.42 15 6 C 0.07 1.73 5.49 -17.35 -0.10 1.63 15 7 N -0.84 -22.67 10.33 55.54 0.57 -22.10 15 8 Si 0.91 19.84 29.56 -169.99 -5.02 14.82 15 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 12 C 0.03 0.86 10.91 -16.80 -0.18 0.68 15 13 N -0.34 -8.85 11.85 30.97 0.37 -8.49 15 14 N -0.36 -8.66 3.91 -49.75 -0.19 -8.86 15 15 C 0.11 2.01 6.41 -67.89 -0.44 1.57 15 16 C -0.19 -3.06 10.45 -26.73 -0.28 -3.34 15 17 C -0.18 -2.78 10.18 -26.69 -0.27 -3.05 15 18 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 1.32 7.59 -51.93 -0.39 0.92 15 20 H 0.04 0.69 7.73 -51.93 -0.40 0.29 15 21 H 0.27 6.80 8.30 -40.82 -0.34 6.46 15 22 H 0.20 5.69 5.77 -52.49 -0.30 5.39 15 23 H 0.12 1.95 7.87 -51.93 -0.41 1.54 15 24 H 0.09 1.19 8.14 -51.93 -0.42 0.76 15 25 H 0.10 1.70 8.14 -51.93 -0.42 1.28 15 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.11 1.92 7.81 -51.93 -0.41 1.51 15 LS Contribution 237.32 15.07 3.58 3.58 Total: -1.00 -29.81 237.32 -6.29 -36.10 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.12 Total: 4.39 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -2.46 Total: -19.44 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.75 Total: -39.44 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.81 -6.29 -36.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265306.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.800 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds