Wall clock time and date at job start Mon Mar 30 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31793 * 119.12498 * 269.72967 * 3 2 1 5 5 C 1.32328 * 120.81515 * 179.76153 * 4 3 2 6 6 C 1.38596 * 119.10597 * 0.50375 * 5 4 3 7 7 C 1.50706 * 120.79786 * 179.73053 * 6 5 4 8 8 C 1.50701 * 109.47197 * 270.02179 * 7 6 5 9 9 H 1.07999 * 119.99684 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00230 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00197 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47214 * 89.99345 * 12 10 8 14 14 H 1.48497 * 109.47380 * 209.99665 * 12 10 8 15 15 H 1.48507 * 109.46890 * 329.99599 * 12 10 8 16 16 C 1.38592 * 118.39880 * 359.75054 * 6 5 4 17 17 N 1.31796 * 119.11883 * 90.00161 * 3 2 1 18 18 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 20 20 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 21 21 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 22 22 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 23 23 H 1.08005 * 120.44645 * 180.23206 * 5 4 3 24 24 H 1.09003 * 109.47481 * 30.02156 * 7 6 5 25 25 H 1.09005 * 109.46919 * 150.02496 * 7 6 5 26 26 H 0.96999 * 120.00035 * 180.02562 * 11 10 8 27 27 H 1.08006 * 120.44459 * 179.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2513 2.0238 -1.1513 5 6 2.6879 3.2724 -1.1903 6 6 2.9245 3.9414 0.0002 7 6 3.4278 5.3620 0.0002 8 6 4.9348 5.3610 0.0002 9 1 5.4741 4.4253 -0.0003 10 6 5.6250 6.5546 0.0007 11 7 4.9682 7.6939 0.0007 12 14 7.4929 6.5533 0.0000 13 1 7.9874 6.5538 -1.4003 14 1 7.9891 7.7650 0.7005 15 1 7.9874 5.3400 0.6991 16 6 2.6875 3.2725 1.1906 17 7 2.2462 2.0255 1.1514 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5140 -0.8900 21 1 1.8933 -0.5137 -0.8901 22 1 1.8933 -0.5138 0.8900 23 1 2.8618 3.7620 -2.1372 24 1 3.0648 5.8761 -0.8898 25 1 3.0648 5.8760 0.8903 26 1 5.4537 8.5337 0.0007 27 1 2.8610 3.7621 2.1375 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288950.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:03 Heat of formation + Delta-G solvation = 22.549337 kcal Electronic energy + Delta-G solvation = -11231.049595 eV Core-core repulsion = 9181.186537 eV Total energy + Delta-G solvation = -2049.863058 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41797 -34.71365 -33.06824 -33.04252 -31.10699 -27.33083 -24.51756 -23.93934 -22.46111 -20.73142 -17.02852 -16.50876 -16.20026 -14.78449 -14.45884 -13.88247 -13.41039 -13.28570 -12.79906 -12.44627 -12.07795 -11.52475 -11.50716 -11.10424 -10.96320 -10.77434 -10.49488 -10.16131 -9.75128 -9.56084 -8.68842 -8.46133 -8.30157 -6.16769 -4.22227 1.63967 1.71394 3.24088 3.30858 3.34787 4.28499 4.40008 4.44175 4.72405 5.18284 5.36405 5.38154 5.42886 5.48857 5.79407 5.86323 5.93832 6.09742 6.22605 6.36088 6.60001 7.07720 7.35489 7.46896 7.63408 7.77969 8.13576 8.69477 8.82045 9.43041 10.92913 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.077037 B = 0.007903 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.376089 B = 3542.269320 C = 3613.067436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.276 3.724 4 N -0.521 5.521 5 C 0.133 3.867 6 C -0.135 4.135 7 C 0.057 3.943 8 C -0.519 4.519 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.133 3.867 17 N -0.521 5.521 18 H 0.060 0.940 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.163 0.837 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.264 0.736 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -9.411 0.000 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C 0.008 3.992 4 N -0.234 5.234 5 C -0.032 4.032 6 C -0.139 4.139 7 C 0.019 3.981 8 C -0.557 4.557 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.529 5.529 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.032 4.032 17 N -0.234 5.234 18 H 0.079 0.921 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.180 0.820 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.725 -10.158 0.004 11.660 hybrid contribution 1.470 1.157 -0.010 1.871 sum -4.255 -9.000 -0.006 9.956 Atomic orbital electron populations 1.21673 0.94321 1.01715 1.02258 1.20176 0.96214 0.88959 1.03302 1.22860 0.95126 0.97177 0.84071 1.68103 1.13932 1.10885 1.30527 1.23110 0.91925 0.89206 0.98961 1.22435 0.95373 1.01921 0.94187 1.18253 0.96112 0.84672 0.99059 1.20993 0.90071 0.92581 1.52103 0.92584 1.24992 0.98836 0.95411 0.94799 1.69942 1.35769 0.97397 1.49753 0.86496 0.85030 0.77678 0.78299 1.20459 1.21002 1.19795 1.23108 0.91887 0.89229 0.98965 1.68103 1.13950 1.10874 1.30522 0.92064 0.92510 0.92522 0.89927 0.89930 0.81960 0.94694 0.94685 0.92608 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 37.16 0.37 -1.31 15 2 C -0.05 -0.65 6.37 -27.88 -0.18 -0.83 15 3 C 0.28 5.02 6.90 -157.19 -1.08 3.94 15 4 N -0.52 -10.04 10.33 -10.72 -0.11 -10.15 15 5 C 0.13 2.65 11.01 -17.21 -0.19 2.46 15 6 C -0.14 -2.87 5.10 -104.36 -0.53 -3.41 15 7 C 0.06 1.39 5.15 -29.03 -0.15 1.24 15 8 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 15 9 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 11 N -0.89 -25.33 13.29 55.43 0.74 -24.59 15 12 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 15 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 16 C 0.13 2.66 11.01 -17.21 -0.19 2.47 15 17 N -0.52 -10.04 10.33 -10.72 -0.11 -10.15 15 18 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.70 8.14 -51.92 -0.42 0.28 15 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.16 2.95 8.06 -52.48 -0.42 2.52 15 24 H 0.03 0.88 8.10 -51.93 -0.42 0.46 15 25 H 0.03 0.88 8.10 -51.93 -0.42 0.46 15 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 27 H 0.16 2.95 8.06 -52.48 -0.42 2.53 15 LS Contribution 243.89 15.07 3.68 3.68 Total: -1.00 -29.19 243.89 -6.54 -35.73 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.34 Total: -2.34 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.37 Total: -8.14 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.51 Total: -44.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.19 -6.54 -35.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288950.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.278 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds