Wall clock time and date at job start Mon Mar 30 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31793 * 119.12498 * 269.72967 * 3 2 1 5 5 C 1.32328 * 120.81515 * 179.76153 * 4 3 2 6 6 C 1.38596 * 119.10597 * 0.50375 * 5 4 3 7 7 C 1.50706 * 120.79786 * 179.73053 * 6 5 4 8 8 C 1.50701 * 109.47197 * 270.02179 * 7 6 5 9 9 H 1.07999 * 119.99684 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00230 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00197 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47214 * 89.99345 * 12 10 8 14 14 H 1.48497 * 109.47380 * 209.99665 * 12 10 8 15 15 H 1.48507 * 109.46890 * 329.99599 * 12 10 8 16 16 C 1.38592 * 118.39880 * 359.75054 * 6 5 4 17 17 N 1.31796 * 119.11883 * 90.00161 * 3 2 1 18 18 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 20 20 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 21 21 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 22 22 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 23 23 H 1.08005 * 120.44645 * 180.23206 * 5 4 3 24 24 H 1.09003 * 109.47481 * 30.02156 * 7 6 5 25 25 H 1.09005 * 109.46919 * 150.02496 * 7 6 5 26 26 H 0.96999 * 120.00035 * 180.02562 * 11 10 8 27 27 H 1.08006 * 120.44459 * 179.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2513 2.0238 -1.1513 5 6 2.6879 3.2724 -1.1903 6 6 2.9245 3.9414 0.0002 7 6 3.4278 5.3620 0.0002 8 6 4.9348 5.3610 0.0002 9 1 5.4741 4.4253 -0.0003 10 6 5.6250 6.5546 0.0007 11 7 4.9682 7.6939 0.0007 12 14 7.4929 6.5533 0.0000 13 1 7.9874 6.5538 -1.4003 14 1 7.9891 7.7650 0.7005 15 1 7.9874 5.3400 0.6991 16 6 2.6875 3.2725 1.1906 17 7 2.2462 2.0255 1.1514 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5140 -0.8900 21 1 1.8933 -0.5137 -0.8901 22 1 1.8933 -0.5138 0.8900 23 1 2.8618 3.7620 -2.1372 24 1 3.0648 5.8761 -0.8898 25 1 3.0648 5.8760 0.8903 26 1 5.4537 8.5337 0.0007 27 1 2.8610 3.7621 2.1375 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288950.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:03 Heat of formation + Delta-G solvation = 5.263677 kcal Electronic energy + Delta-G solvation = -11231.799158 eV Core-core repulsion = 9181.186537 eV Total energy + Delta-G solvation = -2050.612621 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.94434 -36.31990 -34.76459 -34.57642 -32.71467 -29.07055 -26.12925 -25.49116 -24.00930 -22.26149 -18.57456 -18.55531 -17.64854 -16.69042 -15.94220 -15.04765 -14.97042 -14.71455 -14.32303 -14.28460 -13.47254 -13.43015 -12.89757 -12.64349 -12.58172 -12.25091 -11.96780 -11.68574 -11.68349 -11.33947 -10.66309 -10.12693 -9.96567 -8.24532 -6.37362 0.08779 0.14365 1.40350 1.41166 1.51890 2.37856 2.85827 3.08060 3.08114 3.26248 3.84993 4.14931 4.17399 4.32718 4.40780 4.43605 4.88129 4.91497 5.02187 5.17716 5.27426 5.32455 5.54730 5.58247 5.68050 6.05939 6.10982 6.73508 7.17142 7.31874 8.85055 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.077037 B = 0.007903 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.376089 B = 3542.269320 C = 3613.067436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C 0.276 3.724 4 N -0.527 5.527 5 C 0.135 3.865 6 C -0.159 4.159 7 C 0.069 3.931 8 C -0.534 4.534 9 H 0.050 0.950 10 C 0.013 3.987 11 N -0.923 5.923 12 Si 0.962 3.038 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.270 1.270 16 C 0.135 3.865 17 N -0.527 5.527 18 H 0.093 0.907 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.174 0.826 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.267 0.733 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 -10.993 -0.018 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C 0.008 3.992 4 N -0.241 5.241 5 C -0.030 4.030 6 C -0.162 4.162 7 C 0.031 3.969 8 C -0.572 4.572 9 H 0.069 0.931 10 C -0.187 4.187 11 N -0.562 5.562 12 Si 0.787 3.213 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.194 1.194 16 C -0.030 4.030 17 N -0.241 5.241 18 H 0.112 0.888 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.115 0.885 22 H 0.115 0.885 23 H 0.191 0.809 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.497 -11.754 -0.014 12.976 hybrid contribution 1.327 1.574 -0.005 2.058 sum -4.171 -10.180 -0.019 11.002 Atomic orbital electron populations 1.21646 0.92665 1.03618 1.01422 1.20412 0.97476 0.86136 1.04702 1.23862 0.93127 0.98736 0.83460 1.68241 1.14424 1.10408 1.30993 1.23293 0.91119 0.89564 0.99020 1.22139 0.97921 1.00709 0.95479 1.17960 0.95057 0.86537 0.97381 1.21279 0.91554 0.92432 1.51902 0.93143 1.25809 1.03454 0.95036 0.94369 1.70043 1.37593 0.97991 1.50610 0.85484 0.79482 0.77795 0.78528 1.19759 1.20398 1.19415 1.23291 0.91100 0.89589 0.99026 1.68241 1.14440 1.10400 1.30994 0.88832 0.93337 0.93344 0.88516 0.88523 0.80868 0.96337 0.96336 0.92362 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.89 71.98 0.71 -2.10 15 2 C -0.05 -1.19 6.37 29.85 0.19 -1.00 15 3 C 0.28 9.55 6.90 138.75 0.96 10.50 15 4 N -0.53 -19.58 10.33 -187.84 -1.94 -21.52 15 5 C 0.14 5.33 11.01 84.70 0.93 6.26 15 6 C -0.16 -6.76 5.10 -19.69 -0.10 -6.86 15 7 C 0.07 3.43 5.15 29.10 0.15 3.58 15 8 C -0.53 -28.99 9.09 25.60 0.23 -28.76 15 9 H 0.05 2.74 7.74 -2.91 -0.02 2.71 15 10 C 0.01 0.69 5.46 84.65 0.46 1.15 15 11 N -0.92 -53.03 13.29 21.45 0.28 -52.74 15 12 Si 0.96 42.85 29.54 68.60 2.03 44.88 15 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 16 C 0.14 5.33 11.01 84.70 0.93 6.26 15 17 N -0.53 -19.60 10.33 -187.84 -1.94 -21.54 15 18 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.05 1.09 8.14 -2.38 -0.02 1.07 15 21 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.17 6.25 8.06 -2.91 -0.02 6.23 15 24 H 0.02 0.96 8.10 -2.39 -0.02 0.94 15 25 H 0.02 0.96 8.10 -2.38 -0.02 0.94 15 26 H 0.27 14.44 8.31 -92.71 -0.77 13.67 15 27 H 0.17 6.26 8.06 -2.91 -0.02 6.23 15 Total: -1.00 -60.94 243.89 4.04 -56.90 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.15 Total: 5.00 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 4.47 Total: -10.97 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -3.60 Total: -95.80 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -60.94 4.04 -56.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288950.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.162 kcal (2) G-P(sol) polarization free energy of solvation -60.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds