Wall clock time and date at job start Mon Mar 30 2020 02:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32349 * 120.44979 * 2 1 4 4 C 1.31773 * 120.81978 * 180.27204 * 3 2 1 5 5 N 1.31813 * 121.75654 * 0.02562 * 4 3 2 6 6 C 1.32318 * 120.81731 * 0.02562 * 5 4 3 7 7 C 1.38585 * 120.44650 * 180.27569 * 2 1 3 8 8 C 1.50700 * 120.80019 * 359.70600 * 7 2 1 9 9 C 1.53000 * 109.47152 * 84.99550 * 8 7 2 10 10 C 1.50700 * 109.47152 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00004 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00237 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99752 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47117 * 90.00197 * 14 12 10 16 16 H 1.48499 * 109.46980 * 209.99785 * 14 12 10 17 17 H 1.48494 * 109.46826 * 329.99796 * 14 12 10 18 18 H 1.08998 * 109.47054 * 269.72066 * 1 2 3 19 19 H 1.08996 * 109.47023 * 29.72222 * 1 2 3 20 20 H 1.09001 * 109.47143 * 149.72600 * 1 2 3 21 21 H 1.08005 * 119.12328 * 180.02562 * 4 3 2 22 22 H 1.08003 * 120.44543 * 180.02562 * 6 5 4 23 23 H 1.08999 * 109.46933 * 205.00276 * 8 7 2 24 24 H 1.09004 * 109.47196 * 324.99847 * 8 7 2 25 25 H 1.08996 * 109.47345 * 300.00009 * 9 8 7 26 26 H 1.09004 * 109.46827 * 60.00071 * 9 8 7 27 27 H 0.96997 * 120.00394 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4954 1.1495 -0.0054 5 7 4.1964 0.0332 -0.0114 6 6 3.5945 -1.1452 -0.0128 7 6 2.2092 -1.1947 -0.0057 8 6 1.4843 -2.5159 -0.0055 9 6 1.1223 -2.8993 -1.4417 10 6 0.3980 -4.2208 -1.4415 11 1 0.2138 -4.7356 -0.5100 12 6 -0.0297 -4.7728 -2.6304 13 7 -0.6613 -5.9263 -2.6302 14 14 0.2895 -3.8829 -4.2415 15 1 1.5963 -4.3177 -4.7967 16 1 -0.7909 -4.2058 -5.2078 17 1 0.3167 -2.4179 -4.0007 18 1 -0.3633 -0.0050 1.0276 19 1 -0.3633 0.8924 -0.5095 20 1 -0.3633 -0.8875 -0.5181 21 1 4.0149 2.0963 -0.0048 22 1 4.1747 -2.0561 -0.0174 23 1 2.1280 -3.2834 0.4244 24 1 0.5741 -2.4308 0.5882 25 1 0.4786 -2.1319 -1.8714 26 1 2.0325 -2.9844 -2.0354 27 1 -0.9619 -6.3148 -3.4666 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261309094.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:11 Heat of formation + Delta-G solvation = 26.638356 kcal Electronic energy + Delta-G solvation = -11434.263207 eV Core-core repulsion = 9384.577462 eV Total energy + Delta-G solvation = -2049.685745 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.82498 -35.18788 -33.91746 -32.56949 -30.15960 -28.37529 -25.82493 -23.04390 -22.38307 -20.40157 -17.50833 -16.91198 -16.55290 -14.88166 -14.27442 -13.87054 -13.66021 -13.36049 -12.81860 -12.72050 -12.63128 -11.92411 -11.69767 -11.08434 -10.97987 -10.34806 -10.25000 -10.08159 -9.78252 -9.28594 -8.96214 -8.75818 -8.61895 -6.12516 -4.11892 1.20074 1.29968 3.25421 3.33682 3.36717 3.99872 4.28509 4.37976 4.43063 4.80482 5.17231 5.21455 5.25076 5.66649 5.74024 5.78653 5.95839 6.21571 6.27440 6.37855 6.56338 6.76124 7.14017 7.24103 7.24977 7.67657 8.31397 8.43000 8.91476 9.49456 11.00561 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050314 B = 0.009658 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.376654 B = 2898.430156 C = 2927.339328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.170 3.830 3 N -0.524 5.524 4 C 0.271 3.729 5 N -0.527 5.527 6 C 0.140 3.860 7 C -0.165 4.165 8 C -0.064 4.064 9 C -0.006 4.006 10 C -0.524 4.524 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.266 1.266 18 H 0.082 0.918 19 H 0.076 0.924 20 H 0.096 0.904 21 H 0.189 0.811 22 H 0.166 0.834 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.018 0.982 26 H 0.012 0.988 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 10.692 4.338 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.024 3.976 3 N -0.239 5.239 4 C -0.017 4.017 5 N -0.241 5.241 6 C -0.025 4.025 7 C -0.169 4.169 8 C -0.102 4.102 9 C -0.044 4.044 10 C -0.561 4.561 11 H 0.093 0.907 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.191 1.191 18 H 0.100 0.900 19 H 0.095 0.905 20 H 0.115 0.885 21 H 0.206 0.794 22 H 0.184 0.816 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.030 11.433 4.218 13.183 hybrid contribution -0.169 -0.413 -0.982 1.079 sum 4.861 11.019 3.235 12.471 Atomic orbital electron populations 1.20899 0.87925 1.04748 1.03481 1.21651 0.97669 0.87718 0.90556 1.68196 1.10371 1.30671 1.14624 1.24733 0.86955 0.96825 0.93181 1.68337 1.42099 0.99280 1.14392 1.23177 0.91875 0.96050 0.91376 1.22025 0.96091 0.98837 0.99915 1.20572 0.99021 0.89703 1.00913 1.19579 0.96443 0.97411 0.90936 1.21075 1.36462 1.03496 0.95114 0.90727 1.24988 0.94494 0.94637 0.99028 1.69897 1.39072 1.17662 1.27220 0.86838 0.78178 0.80811 0.83854 1.20221 1.21212 1.19099 0.89987 0.90468 0.88547 0.79426 0.81639 0.90985 0.90743 0.96350 0.96945 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.48 36.00 0.34 -1.28 15 2 C 0.17 2.80 6.82 -82.24 -0.56 2.24 15 3 N -0.52 -8.48 10.38 -10.80 -0.11 -8.59 15 4 C 0.27 4.02 12.28 -92.16 -1.13 2.89 15 5 N -0.53 -8.39 10.44 -14.58 -0.15 -8.54 15 6 C 0.14 2.23 10.99 -17.20 -0.19 2.05 15 7 C -0.16 -2.78 5.17 -104.35 -0.54 -3.32 15 8 C -0.06 -1.16 4.63 -27.88 -0.13 -1.29 15 9 C -0.01 -0.14 3.86 -27.88 -0.11 -0.25 15 10 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 15 11 H 0.07 2.16 7.99 -52.48 -0.42 1.74 15 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 13 N -0.90 -27.03 13.96 55.43 0.77 -26.26 15 14 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 15 18 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 19 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.10 1.50 5.62 -51.93 -0.29 1.21 15 21 H 0.19 2.07 8.06 -52.48 -0.42 1.64 15 22 H 0.17 2.27 8.06 -52.48 -0.42 1.85 15 23 H 0.07 1.27 8.07 -51.93 -0.42 0.85 15 24 H 0.07 1.31 7.12 -51.93 -0.37 0.94 15 25 H 0.02 0.42 6.01 -51.93 -0.31 0.11 15 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 15 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 234.45 15.07 3.53 3.53 Total: -1.00 -30.56 234.45 -6.44 -37.00 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.06 Total: -2.17 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.75 Total: -11.63 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.51 Total: -43.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.56 -6.44 -37.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309094.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.636 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds