Wall clock time and date at job start Mon Mar 30 2020 02:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32349 * 120.44979 * 2 1 4 4 C 1.31773 * 120.81978 * 180.27204 * 3 2 1 5 5 N 1.31813 * 121.75654 * 0.02562 * 4 3 2 6 6 C 1.32318 * 120.81731 * 0.02562 * 5 4 3 7 7 C 1.38585 * 120.44650 * 180.27569 * 2 1 3 8 8 C 1.50700 * 120.80019 * 359.70600 * 7 2 1 9 9 C 1.53000 * 109.47152 * 84.99550 * 8 7 2 10 10 C 1.50700 * 109.47152 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00004 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00237 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99752 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47117 * 90.00197 * 14 12 10 16 16 H 1.48499 * 109.46980 * 209.99785 * 14 12 10 17 17 H 1.48494 * 109.46826 * 329.99796 * 14 12 10 18 18 H 1.08998 * 109.47054 * 269.72066 * 1 2 3 19 19 H 1.08996 * 109.47023 * 29.72222 * 1 2 3 20 20 H 1.09001 * 109.47143 * 149.72600 * 1 2 3 21 21 H 1.08005 * 119.12328 * 180.02562 * 4 3 2 22 22 H 1.08003 * 120.44543 * 180.02562 * 6 5 4 23 23 H 1.08999 * 109.46933 * 205.00276 * 8 7 2 24 24 H 1.09004 * 109.47196 * 324.99847 * 8 7 2 25 25 H 1.08996 * 109.47345 * 300.00009 * 9 8 7 26 26 H 1.09004 * 109.46827 * 60.00071 * 9 8 7 27 27 H 0.96997 * 120.00394 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4954 1.1495 -0.0054 5 7 4.1964 0.0332 -0.0114 6 6 3.5945 -1.1452 -0.0128 7 6 2.2092 -1.1947 -0.0057 8 6 1.4843 -2.5159 -0.0055 9 6 1.1223 -2.8993 -1.4417 10 6 0.3980 -4.2208 -1.4415 11 1 0.2138 -4.7356 -0.5100 12 6 -0.0297 -4.7728 -2.6304 13 7 -0.6613 -5.9263 -2.6302 14 14 0.2895 -3.8829 -4.2415 15 1 1.5963 -4.3177 -4.7967 16 1 -0.7909 -4.2058 -5.2078 17 1 0.3167 -2.4179 -4.0007 18 1 -0.3633 -0.0050 1.0276 19 1 -0.3633 0.8924 -0.5095 20 1 -0.3633 -0.8875 -0.5181 21 1 4.0149 2.0963 -0.0048 22 1 4.1747 -2.0561 -0.0174 23 1 2.1280 -3.2834 0.4244 24 1 0.5741 -2.4308 0.5882 25 1 0.4786 -2.1319 -1.8714 26 1 2.0325 -2.9844 -2.0354 27 1 -0.9619 -6.3148 -3.4666 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261309094.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:11 Heat of formation + Delta-G solvation = 7.981804 kcal Electronic energy + Delta-G solvation = -11435.072216 eV Core-core repulsion = 9384.577462 eV Total energy + Delta-G solvation = -2050.494754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.03604 -36.69366 -35.20814 -34.45975 -31.78635 -29.62364 -27.44891 -24.47339 -23.71231 -22.06231 -18.99449 -18.73146 -17.69113 -16.46887 -15.89539 -15.41709 -15.13038 -14.69586 -14.56233 -13.97393 -13.81782 -13.50697 -13.14635 -12.88444 -12.58033 -12.01683 -11.75095 -11.62771 -11.46388 -11.22682 -10.76977 -10.17795 -10.08893 -8.29298 -6.32724 -0.01980 0.07946 1.34142 1.36397 1.46524 2.34343 2.79509 3.06569 3.16010 3.30933 3.62054 3.90206 3.95018 4.49150 4.57159 4.64531 4.67956 4.72388 4.97509 4.99546 5.14373 5.38383 5.51273 5.55656 5.64802 6.03269 6.27663 6.75618 7.12269 7.32079 8.87131 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050314 B = 0.009658 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.376654 B = 2898.430156 C = 2927.339328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.164 3.836 3 N -0.536 5.536 4 C 0.274 3.726 5 N -0.538 5.538 6 C 0.141 3.859 7 C -0.182 4.182 8 C -0.051 4.051 9 C -0.002 4.002 10 C -0.526 4.526 11 H 0.042 0.958 12 C 0.011 3.989 13 N -0.948 5.948 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.252 1.252 18 H 0.101 0.899 19 H 0.087 0.913 20 H 0.081 0.919 21 H 0.225 0.775 22 H 0.183 0.817 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.020 0.980 26 H 0.012 0.988 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 12.616 4.014 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.019 3.981 3 N -0.251 5.251 4 C -0.013 4.013 5 N -0.252 5.252 6 C -0.024 4.024 7 C -0.186 4.186 8 C -0.089 4.089 9 C -0.039 4.039 10 C -0.564 4.564 11 H 0.060 0.940 12 C -0.186 4.186 13 N -0.589 5.589 14 Si 0.764 3.236 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.176 1.176 18 H 0.119 0.881 19 H 0.106 0.894 20 H 0.099 0.901 21 H 0.241 0.759 22 H 0.200 0.800 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.958 13.373 3.908 15.153 hybrid contribution -0.435 -0.995 -0.790 1.343 sum 5.524 12.378 3.117 13.909 Atomic orbital electron populations 1.20920 0.86845 1.04461 1.04646 1.21968 0.98627 0.87771 0.89777 1.68299 1.11013 1.30339 1.15404 1.25514 0.86791 0.97918 0.91076 1.68446 1.42190 0.99496 1.15085 1.23497 0.91751 0.96944 0.90210 1.21833 0.96505 0.98045 1.02247 1.20310 0.99542 0.90898 0.98194 1.19475 0.95677 0.94852 0.93906 1.21423 1.36096 1.05088 0.93823 0.93958 1.25865 0.94465 0.95373 1.02911 1.70038 1.40926 1.19608 1.28279 0.85810 0.78198 0.80248 0.79318 1.19501 1.20921 1.17561 0.88094 0.89386 0.90059 0.75909 0.79975 0.90668 0.90470 0.96156 0.96917 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.97 9.48 71.24 0.68 -2.30 15 2 C 0.16 5.05 6.82 42.56 0.29 5.35 15 3 N -0.54 -15.91 10.38 -188.08 -1.95 -17.86 15 4 C 0.27 7.30 12.28 180.88 2.22 9.52 15 5 N -0.54 -15.68 10.44 -200.04 -2.09 -17.77 15 6 C 0.14 4.18 10.99 84.71 0.93 5.11 15 7 C -0.18 -5.82 5.17 -19.69 -0.10 -5.93 15 8 C -0.05 -1.81 4.63 29.85 0.14 -1.67 15 9 C 0.00 -0.08 3.86 29.85 0.12 0.04 15 10 C -0.53 -28.82 9.66 25.60 0.25 -28.57 15 11 H 0.04 2.52 7.99 -2.91 -0.02 2.50 15 12 C 0.01 0.63 5.47 84.66 0.46 1.10 15 13 N -0.95 -57.99 13.96 21.45 0.30 -57.69 15 14 Si 0.94 43.53 27.47 68.60 1.88 45.42 15 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 17 H -0.25 -10.97 6.54 99.48 0.65 -10.32 15 18 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 19 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 20 H 0.08 2.42 5.62 -2.39 -0.01 2.41 15 21 H 0.22 4.05 8.06 -2.91 -0.02 4.02 15 22 H 0.18 4.61 8.06 -2.91 -0.02 4.58 15 23 H 0.07 2.59 8.07 -2.39 -0.02 2.57 15 24 H 0.08 2.66 7.12 -2.39 -0.02 2.65 15 25 H 0.02 0.89 6.01 -2.39 -0.01 0.88 15 26 H 0.01 0.55 7.57 -2.39 -0.02 0.54 15 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 Total: -1.00 -64.47 234.45 4.23 -60.24 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.10 Total: 5.02 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 4.98 Total: -17.37 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.74 Total: -93.32 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -64.47 4.23 -60.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309094.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.221 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds