Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 115.54994 * 2 1 4 4 N 1.31021 * 125.17659 * 130.27656 * 3 2 1 5 5 C 1.33016 * 109.97928 * 179.82575 * 4 3 2 6 6 C 1.39622 * 107.46115 * 0.42950 * 5 4 3 7 7 C 1.40071 * 127.05728 * 179.77896 * 6 5 4 8 8 H 1.07996 * 119.99603 * 343.41900 * 7 6 5 9 9 C 1.40069 * 119.99651 * 163.41561 * 7 6 5 10 10 N 1.30858 * 119.99596 * 169.50844 * 9 7 6 11 11 Si 1.86796 * 120.00392 * 349.50894 * 9 7 6 12 12 H 1.48500 * 109.47107 * 85.59459 * 11 9 7 13 13 H 1.48496 * 109.47355 * 205.60051 * 11 9 7 14 14 H 1.48500 * 109.46855 * 325.59960 * 11 9 7 15 15 N 1.35071 * 125.17791 * 310.58190 * 3 2 1 16 16 H 0.96999 * 126.48296 * 0.02562 * 15 3 2 17 17 C 1.52989 * 117.49953 * 214.28950 * 2 1 3 18 18 C 1.52991 * 60.00292 * 252.51558 * 17 2 1 19 19 H 1.09003 * 109.47339 * 274.33131 * 1 2 3 20 20 H 1.08995 * 109.47309 * 154.32897 * 1 2 3 21 21 H 1.09011 * 109.46811 * 34.33077 * 1 2 3 22 22 H 1.07993 * 126.26949 * 180.17748 * 5 4 3 23 23 H 0.97002 * 119.99776 * 179.97438 * 10 9 7 24 24 H 1.09009 * 117.50032 * 0.02562 * 17 2 1 25 25 H 1.09006 * 117.50242 * 145.01969 * 17 2 1 26 26 H 1.09011 * 117.49878 * 252.51345 * 18 17 2 27 27 H 1.08999 * 117.52024 * 107.48204 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 7 3.1302 1.7420 0.8171 5 6 3.4830 2.9961 0.5486 6 6 2.6880 3.4373 -0.5110 7 6 2.7155 4.6992 -1.1185 8 1 3.1962 5.5279 -0.6201 9 6 2.1197 4.8859 -2.3723 10 7 1.9619 6.0946 -2.8481 11 14 1.5503 3.4096 -3.3651 12 1 0.1787 3.0282 -2.9425 13 1 1.5451 3.7563 -4.8090 14 1 2.4744 2.2707 -3.1328 15 7 1.8676 2.3715 -0.8385 16 1 1.1954 2.3546 -1.5375 17 6 2.2364 -1.1212 -0.7645 18 6 2.2364 -1.1207 0.7654 19 1 -0.3634 0.0776 1.0247 20 1 -0.3634 -0.9262 -0.4452 21 1 -0.3633 0.8487 -0.5796 22 1 4.2423 3.5695 1.0595 23 1 1.5496 6.2240 -3.7166 24 1 1.6112 -1.8587 -1.2679 25 1 3.1716 -0.8756 -1.2680 26 1 3.1715 -0.8747 1.2687 27 1 1.6111 -1.8578 1.2692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261329984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = 67.026628 kcal Electronic energy + Delta-G solvation = -11778.046080 eV Core-core repulsion = 9730.111701 eV Total energy + Delta-G solvation = -2047.934378 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39575 -37.05274 -33.61432 -31.29378 -29.35974 -28.09904 -24.87782 -22.04240 -21.60356 -19.89601 -18.57136 -17.74001 -16.19456 -14.91481 -14.29543 -14.07109 -13.37164 -13.08677 -12.87983 -12.29367 -12.07000 -11.78546 -11.46475 -11.16772 -11.09342 -10.84197 -10.15767 -9.97773 -9.61917 -9.46473 -8.66704 -8.57051 -7.24840 -6.99549 -4.38799 2.66260 2.90165 2.92715 3.32188 3.71121 3.99769 4.34389 4.49878 5.09270 5.14589 5.26981 5.32141 5.47194 5.95594 5.97042 6.03470 6.21820 6.27255 6.50486 6.60136 6.64593 6.88770 7.10587 7.49339 7.83388 8.26732 8.40812 8.69839 8.86684 9.58295 10.07037 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047413 B = 0.013799 C = 0.011725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.409904 B = 2028.684423 C = 2387.576415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.034 4.034 3 C 0.123 3.877 4 N -0.458 5.458 5 C -0.169 4.169 6 C 0.181 3.819 7 C -0.437 4.437 8 H 0.108 0.892 9 C 0.081 3.919 10 N -0.816 5.816 11 Si 0.874 3.126 12 H -0.267 1.267 13 H -0.275 1.275 14 H -0.245 1.245 15 N -0.602 5.602 16 H 0.390 0.610 17 C -0.178 4.178 18 C -0.149 4.149 19 H 0.062 0.938 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.149 0.851 23 H 0.285 0.715 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -9.651 -0.100 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.036 4.036 3 C -0.132 4.132 4 N -0.176 5.176 5 C -0.317 4.317 6 C 0.067 3.933 7 C -0.472 4.472 8 H 0.126 0.874 9 C -0.136 4.136 10 N -0.443 5.443 11 Si 0.701 3.299 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.169 1.169 15 N -0.220 5.220 16 H 0.231 0.769 17 C -0.216 4.216 18 C -0.186 4.186 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.166 0.834 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.145 -9.969 0.423 10.462 hybrid contribution -0.999 0.152 -1.665 1.947 sum -4.144 -9.816 -1.242 10.727 Atomic orbital electron populations 1.21325 0.92250 1.01283 1.02041 1.18970 0.92787 0.85595 1.06278 1.20808 1.04245 0.91145 0.96987 1.69186 1.11459 1.13762 1.23217 1.22071 1.09505 0.93282 1.06838 1.19201 0.90425 0.87392 0.96243 1.18545 1.33200 0.93597 1.01849 0.87375 1.25972 0.93267 0.96592 0.97778 1.69594 1.34097 1.21963 1.18630 0.86985 0.79753 0.83295 0.79875 1.19377 1.20055 1.16928 1.43470 1.33452 1.13746 1.31298 0.76901 1.23158 1.02688 1.00733 0.95024 1.22856 1.02947 0.99081 0.93724 0.91859 0.92331 0.92841 0.83400 0.90455 0.89144 0.89022 0.87717 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.84 37.16 0.37 -1.36 15 2 C -0.03 -0.63 2.65 -155.67 -0.41 -1.04 15 3 C 0.12 2.86 7.22 -154.95 -1.12 1.74 15 4 N -0.46 -11.50 10.76 -9.76 -0.11 -11.60 15 5 C -0.17 -4.37 11.98 -16.52 -0.20 -4.57 15 6 C 0.18 4.78 6.27 -83.68 -0.52 4.25 15 7 C -0.44 -11.89 9.92 -38.21 -0.38 -12.27 15 8 H 0.11 3.05 8.06 -52.49 -0.42 2.62 15 9 C 0.08 2.12 5.52 -17.28 -0.10 2.02 15 10 N -0.82 -21.59 13.93 55.56 0.77 -20.81 15 11 Si 0.87 19.35 24.67 -169.99 -4.19 15.16 15 12 H -0.27 -5.56 6.82 56.52 0.39 -5.17 15 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 14 H -0.25 -5.61 6.73 56.52 0.38 -5.23 15 15 N -0.60 -14.68 4.63 -7.86 -0.04 -14.72 15 16 H 0.39 8.93 4.18 -40.82 -0.17 8.76 15 17 C -0.18 -2.84 9.88 -26.74 -0.26 -3.10 15 18 C -0.15 -2.36 9.85 -26.74 -0.26 -2.63 15 19 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.06 0.73 7.90 -51.93 -0.41 0.32 15 21 H 0.05 0.87 7.87 -51.92 -0.41 0.46 15 22 H 0.15 3.55 8.06 -52.49 -0.42 3.13 15 23 H 0.28 6.83 8.30 -40.82 -0.34 6.49 15 24 H 0.09 1.19 8.05 -51.92 -0.42 0.77 15 25 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 26 H 0.10 1.82 7.92 -51.92 -0.41 1.41 15 27 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 LS Contribution 232.53 15.07 3.50 3.50 Total: -1.00 -28.82 232.53 -6.05 -34.87 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.10 Total: 10.55 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -2.89 Total: -16.94 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.63 Total: -47.14 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.19 Total: 15.16 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.82 -6.05 -34.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.893 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds