Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 115.54994 * 2 1 4 4 N 1.31021 * 125.17659 * 130.27656 * 3 2 1 5 5 C 1.33016 * 109.97928 * 179.82575 * 4 3 2 6 6 C 1.39622 * 107.46115 * 0.42950 * 5 4 3 7 7 C 1.40071 * 127.05728 * 179.77896 * 6 5 4 8 8 H 1.07996 * 119.99603 * 343.41900 * 7 6 5 9 9 C 1.40069 * 119.99651 * 163.41561 * 7 6 5 10 10 N 1.30858 * 119.99596 * 169.50844 * 9 7 6 11 11 Si 1.86796 * 120.00392 * 349.50894 * 9 7 6 12 12 H 1.48500 * 109.47107 * 85.59459 * 11 9 7 13 13 H 1.48496 * 109.47355 * 205.60051 * 11 9 7 14 14 H 1.48500 * 109.46855 * 325.59960 * 11 9 7 15 15 N 1.35071 * 125.17791 * 310.58190 * 3 2 1 16 16 H 0.96999 * 126.48296 * 0.02562 * 15 3 2 17 17 C 1.52989 * 117.49953 * 214.28950 * 2 1 3 18 18 C 1.52991 * 60.00292 * 252.51558 * 17 2 1 19 19 H 1.09003 * 109.47339 * 274.33131 * 1 2 3 20 20 H 1.08995 * 109.47309 * 154.32897 * 1 2 3 21 21 H 1.09011 * 109.46811 * 34.33077 * 1 2 3 22 22 H 1.07993 * 126.26949 * 180.17748 * 5 4 3 23 23 H 0.97002 * 119.99776 * 179.97438 * 10 9 7 24 24 H 1.09009 * 117.50032 * 0.02562 * 17 2 1 25 25 H 1.09006 * 117.50242 * 145.01969 * 17 2 1 26 26 H 1.09011 * 117.49878 * 252.51345 * 18 17 2 27 27 H 1.08999 * 117.52024 * 107.48204 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 7 3.1302 1.7420 0.8171 5 6 3.4830 2.9961 0.5486 6 6 2.6880 3.4373 -0.5110 7 6 2.7155 4.6992 -1.1185 8 1 3.1962 5.5279 -0.6201 9 6 2.1197 4.8859 -2.3723 10 7 1.9619 6.0946 -2.8481 11 14 1.5503 3.4096 -3.3651 12 1 0.1787 3.0282 -2.9425 13 1 1.5451 3.7563 -4.8090 14 1 2.4744 2.2707 -3.1328 15 7 1.8676 2.3715 -0.8385 16 1 1.1954 2.3546 -1.5375 17 6 2.2364 -1.1212 -0.7645 18 6 2.2364 -1.1207 0.7654 19 1 -0.3634 0.0776 1.0247 20 1 -0.3634 -0.9262 -0.4452 21 1 -0.3633 0.8487 -0.5796 22 1 4.2423 3.5695 1.0595 23 1 1.5496 6.2240 -3.7166 24 1 1.6112 -1.8587 -1.2679 25 1 3.1716 -0.8756 -1.2680 26 1 3.1715 -0.8747 1.2687 27 1 1.6111 -1.8578 1.2692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261329984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = 48.971937 kcal Electronic energy + Delta-G solvation = -11778.828990 eV Core-core repulsion = 9730.111701 eV Total energy + Delta-G solvation = -2048.717289 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.29935 -38.41876 -35.60123 -33.25136 -31.26484 -29.36816 -26.79563 -23.39741 -23.26151 -21.77129 -20.42597 -19.61470 -17.88962 -16.61469 -16.01665 -15.75705 -15.04830 -14.77310 -14.32624 -13.95620 -13.72895 -13.27287 -13.21736 -12.91678 -12.51614 -12.27876 -12.00238 -11.49434 -11.24078 -10.88746 -10.62559 -10.49957 -9.22298 -8.96644 -6.44157 0.89270 1.07652 1.19058 1.45611 1.88164 2.27331 2.49389 2.98705 3.11373 3.70184 3.87872 4.03392 4.19671 4.62961 4.79395 4.85280 4.89295 4.90817 4.99092 5.07442 5.13918 5.31440 5.39134 5.48514 5.86373 6.14431 6.43563 6.64956 6.96281 7.63217 8.14505 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047413 B = 0.013799 C = 0.011725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.409904 B = 2028.684423 C = 2387.576415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C 0.144 3.856 4 N -0.483 5.483 5 C -0.192 4.192 6 C 0.161 3.839 7 C -0.468 4.468 8 H 0.077 0.923 9 C 0.043 3.957 10 N -0.847 5.847 11 Si 0.931 3.069 12 H -0.240 1.240 13 H -0.255 1.255 14 H -0.257 1.257 15 N -0.601 5.601 16 H 0.398 0.602 17 C -0.161 4.161 18 C -0.136 4.136 19 H 0.068 0.932 20 H 0.096 0.904 21 H 0.040 0.960 22 H 0.151 0.849 23 H 0.296 0.704 24 H 0.131 0.869 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -12.637 -0.960 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.113 4.113 4 N -0.201 5.201 5 C -0.338 4.338 6 C 0.047 3.953 7 C -0.503 4.503 8 H 0.095 0.905 9 C -0.172 4.172 10 N -0.476 5.476 11 Si 0.753 3.247 12 H -0.166 1.166 13 H -0.179 1.179 14 H -0.182 1.182 15 N -0.219 5.219 16 H 0.240 0.760 17 C -0.199 4.199 18 C -0.173 4.173 19 H 0.087 0.913 20 H 0.115 0.885 21 H 0.059 0.941 22 H 0.169 0.831 23 H 0.107 0.893 24 H 0.149 0.851 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.892 -12.915 -0.433 13.817 hybrid contribution -0.413 1.037 -1.318 1.727 sum -5.305 -11.878 -1.751 13.126 Atomic orbital electron populations 1.21344 0.89640 1.02757 1.02663 1.19394 0.94710 0.83488 1.09775 1.22011 1.02199 0.92575 0.94560 1.69243 1.13007 1.13350 1.24536 1.22293 1.10054 0.94085 1.07323 1.19126 0.91410 0.87845 0.96906 1.18469 1.35064 0.93476 1.03289 0.90471 1.26694 0.92972 0.99487 0.98044 1.69632 1.34698 1.23669 1.19565 0.86094 0.80139 0.79168 0.79272 1.16551 1.17940 1.18178 1.43538 1.33263 1.13449 1.31632 0.76005 1.23249 1.01903 0.99507 0.95203 1.22955 1.02135 0.98171 0.94064 0.91338 0.88535 0.94129 0.83126 0.89329 0.85124 0.90935 0.89900 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 9.84 71.98 0.71 -2.12 15 2 C -0.07 -2.39 2.65 -52.93 -0.14 -2.53 15 3 C 0.14 6.53 7.22 137.97 1.00 7.53 15 4 N -0.48 -24.28 10.76 -184.81 -1.99 -26.27 15 5 C -0.19 -10.20 11.98 84.85 1.02 -9.19 15 6 C 0.16 8.69 6.27 38.88 0.24 8.93 15 7 C -0.47 -26.55 9.92 23.16 0.23 -26.32 15 8 H 0.08 4.68 8.06 -2.91 -0.02 4.65 15 9 C 0.04 2.25 5.52 85.28 0.47 2.72 15 10 N -0.85 -45.52 13.93 21.86 0.30 -45.21 15 11 Si 0.93 38.90 24.67 68.60 1.69 40.59 15 12 H -0.24 -8.98 6.82 99.48 0.68 -8.31 15 13 H -0.25 -9.81 7.11 99.48 0.71 -9.11 15 14 H -0.26 -11.19 6.73 99.48 0.67 -10.52 15 15 N -0.60 -28.81 4.63 -178.77 -0.83 -29.63 15 16 H 0.40 17.42 4.18 -92.71 -0.39 17.03 15 17 C -0.16 -4.44 9.88 30.59 0.30 -4.13 15 18 C -0.14 -3.80 9.85 30.59 0.30 -3.50 15 19 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 20 H 0.10 1.83 7.90 -2.39 -0.02 1.81 15 21 H 0.04 1.16 7.87 -2.38 -0.02 1.14 15 22 H 0.15 7.62 8.06 -2.91 -0.02 7.60 15 23 H 0.30 14.16 8.30 -92.71 -0.77 13.39 15 24 H 0.13 2.59 8.05 -2.38 -0.02 2.58 15 25 H 0.07 2.29 8.14 -2.38 -0.02 2.27 15 26 H 0.08 2.71 7.92 -2.38 -0.02 2.69 15 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -63.61 232.53 4.02 -59.59 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.72 Total: 29.55 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.13 Total: -28.61 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -2.51 Total: -101.12 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.69 Total: 40.59 kcal Total: -63.61 4.02 -59.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.558 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds