Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 C 1.50702 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.39052 * 120.64843 * 90.00333 * 4 3 2 6 6 C 1.37632 * 119.31170 * 180.02562 * 5 4 3 7 7 N 1.33500 * 120.63928 * 0.02562 * 6 5 4 8 8 C 1.34557 * 119.29928 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00033 * 329.76942 * 8 7 6 10 10 C 1.39987 * 119.99764 * 149.76725 * 8 7 6 11 11 N 1.30821 * 119.99876 * 342.42629 * 10 8 7 12 12 Si 1.86797 * 120.00051 * 162.42288 * 10 8 7 13 13 H 1.48497 * 109.47343 * 89.99798 * 12 10 8 14 14 H 1.48499 * 109.47138 * 210.00362 * 12 10 8 15 15 H 1.48506 * 109.47011 * 330.00045 * 12 10 8 16 16 C 1.33495 * 121.39527 * 0.24879 * 7 6 5 17 17 C 1.37637 * 120.63697 * 359.45472 * 16 7 6 18 18 H 1.08994 * 109.46813 * 59.99486 * 1 2 3 19 19 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46471 * 299.99557 * 1 2 3 21 21 H 1.09006 * 109.46946 * 240.00257 * 2 1 3 22 22 H 1.09000 * 109.47225 * 120.00584 * 2 1 3 23 23 H 1.09004 * 109.47099 * 60.00827 * 3 2 1 24 24 H 1.09000 * 109.47560 * 300.00378 * 3 2 1 25 25 H 1.07994 * 120.34023 * 0.04055 * 5 4 3 26 26 H 1.07996 * 119.68091 * 179.97438 * 6 5 4 27 27 H 0.96999 * 119.99761 * 180.02562 * 11 10 8 28 28 H 1.07997 * 119.67984 * 179.72089 * 16 7 6 29 29 H 1.07996 * 120.34243 * 180.27271 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2554 1.4427 -1.1972 6 6 5.6314 1.4421 -1.1657 7 7 6.2852 1.4408 -0.0018 8 6 7.6308 1.4398 -0.0024 9 1 8.1701 0.9690 -0.8111 10 6 8.3317 2.0490 1.0451 11 7 7.7243 2.9016 1.8297 12 14 10.1341 1.6444 1.3227 13 1 10.9783 2.5841 0.5420 14 1 10.4539 1.7745 2.7669 15 1 10.4029 0.2527 0.8796 16 6 5.6324 1.4351 1.1626 17 6 4.2564 1.4416 1.1953 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8901 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6768 1.9563 0.8901 24 1 1.6767 1.9564 -0.8899 25 1 3.7313 1.4435 -2.1414 26 1 6.1875 1.4419 -2.0915 27 1 8.2101 3.3240 2.5553 28 1 6.1893 1.4296 2.0879 29 1 3.7332 1.4414 2.1400 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306436098.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = 74.199312 kcal Electronic energy + Delta-G solvation = -11571.491568 eV Core-core repulsion = 9575.638392 eV Total energy + Delta-G solvation = -1995.853176 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.71232 -37.95095 -35.62689 -33.93155 -32.47137 -29.62335 -27.12177 -25.21515 -23.97401 -22.15650 -21.30217 -18.44454 -17.72935 -16.92059 -16.84091 -16.03647 -15.84330 -15.55070 -14.92814 -14.48326 -14.03384 -13.70534 -13.51994 -13.24749 -12.94462 -12.57962 -12.37634 -12.17560 -12.08805 -11.69448 -11.49120 -10.82541 -10.43477 -9.34732 -7.26692 -0.33364 0.01801 1.32116 1.44747 1.64311 1.93953 2.13305 2.27984 2.61029 3.56831 3.66412 3.85700 3.88361 4.03659 4.08576 4.12184 4.34109 4.54313 4.59711 4.71328 4.72974 4.82193 4.94473 5.01178 5.05422 5.14575 5.21192 5.28791 5.37538 5.80238 6.19160 6.32047 7.59177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.077 4.077 4 C -0.102 4.102 5 C -0.090 4.090 6 C -0.023 4.023 7 N -0.131 5.131 8 C -0.315 4.315 9 H 0.154 0.846 10 C 0.052 3.948 11 N -0.749 5.749 12 Si 0.957 3.043 13 H -0.250 1.250 14 H -0.257 1.257 15 H -0.245 1.245 16 C 0.023 3.977 17 C -0.092 4.092 18 H 0.055 0.945 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.149 0.851 26 H 0.172 0.828 27 H 0.321 0.679 28 H 0.180 0.820 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 -2.090 -1.668 4.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.114 4.114 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.159 4.159 7 N 0.222 4.778 8 C -0.450 4.450 9 H 0.171 0.829 10 C -0.175 4.175 11 N -0.371 5.371 12 Si 0.775 3.225 13 H -0.174 1.174 14 H -0.180 1.180 15 H -0.168 1.168 16 C -0.113 4.113 17 C -0.110 4.110 18 H 0.075 0.925 19 H 0.076 0.924 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.167 0.833 26 H 0.190 0.810 27 H 0.135 0.865 28 H 0.197 0.803 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.293 -1.900 -1.462 4.073 hybrid contribution 0.649 0.133 0.185 0.688 sum -2.644 -1.767 -1.277 3.427 Atomic orbital electron populations 1.21797 0.95311 1.02052 1.02064 1.21534 0.96052 0.95621 1.02507 1.20593 0.89407 0.97826 1.03598 1.20342 0.96796 1.01247 0.92540 1.21294 0.92163 0.97989 0.99410 1.22402 0.94015 1.08981 0.90532 1.38304 1.08516 1.25996 1.04973 1.21257 0.78820 1.33601 1.11371 0.82880 1.26449 1.05790 0.91905 0.93350 1.69465 1.42149 1.13356 1.12146 0.85331 0.74884 0.81633 0.80630 1.17413 1.18011 1.16770 1.22528 0.93416 1.04020 0.91351 1.21383 0.92299 0.97943 0.99400 0.92540 0.92448 0.92533 0.91775 0.91747 0.90481 0.90510 0.83315 0.81038 0.86523 0.80293 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.34 9.91 37.16 0.37 0.70 15 2 C -0.12 0.26 5.92 -26.73 -0.16 0.11 15 3 C -0.08 0.18 5.39 -27.88 -0.15 0.03 15 4 C -0.10 0.11 5.19 -104.02 -0.54 -0.43 15 5 C -0.09 0.14 9.80 -39.50 -0.39 -0.25 15 6 C -0.02 0.01 10.22 -17.05 -0.17 -0.16 15 7 N -0.13 -0.22 2.58 -62.69 -0.16 -0.38 15 8 C -0.31 -0.72 9.28 -15.70 -0.15 -0.87 15 9 H 0.15 0.05 7.91 -52.49 -0.41 -0.36 15 10 C 0.05 0.15 4.94 -17.33 -0.09 0.07 15 11 N -0.75 -3.15 11.24 55.55 0.62 -2.53 15 12 Si 0.96 1.42 29.59 -169.99 -5.03 -3.61 15 13 H -0.25 -0.61 7.11 56.52 0.40 -0.20 15 14 H -0.26 -0.59 7.11 56.52 0.40 -0.19 15 15 H -0.24 -0.41 7.11 56.52 0.40 0.00 15 16 C 0.02 0.03 8.99 -17.05 -0.15 -0.12 15 17 C -0.09 0.04 9.80 -39.50 -0.39 -0.35 15 18 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 15 19 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 15 20 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 15 21 H 0.06 -0.13 8.14 -51.93 -0.42 -0.56 15 22 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 15 23 H 0.08 -0.19 8.10 -51.93 -0.42 -0.61 15 24 H 0.08 -0.21 8.10 -51.93 -0.42 -0.63 15 25 H 0.15 -0.58 8.06 -52.49 -0.42 -1.00 15 26 H 0.17 -0.49 8.01 -52.49 -0.42 -0.91 15 27 H 0.32 1.02 8.30 -40.82 -0.34 0.68 15 28 H 0.18 0.34 6.18 -52.49 -0.32 0.01 15 29 H 0.15 -0.35 8.06 -52.49 -0.42 -0.77 15 LS Contribution 247.61 15.07 3.73 3.73 Total: 0.00 -4.04 247.61 -6.75 -10.79 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -4.10 Total: -6.72 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.81 Total: -1.28 kcal Atomic # 7 Polarization: -3.37 SS G_CDS: 0.46 Total: -2.91 kcal Atomic # 14 Polarization: 1.42 SS G_CDS: -5.03 Total: -3.61 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -4.04 -6.75 -10.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306436098.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.987 kcal (2) G-P(sol) polarization free energy of solvation -4.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds