Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 C 1.50702 * 109.46993 * 180.02562 * 3 2 1 5 5 C 1.39052 * 120.64843 * 90.00333 * 4 3 2 6 6 C 1.37632 * 119.31170 * 180.02562 * 5 4 3 7 7 N 1.33500 * 120.63928 * 0.02562 * 6 5 4 8 8 C 1.34557 * 119.29928 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00033 * 329.76942 * 8 7 6 10 10 C 1.39987 * 119.99764 * 149.76725 * 8 7 6 11 11 N 1.30821 * 119.99876 * 342.42629 * 10 8 7 12 12 Si 1.86797 * 120.00051 * 162.42288 * 10 8 7 13 13 H 1.48497 * 109.47343 * 89.99798 * 12 10 8 14 14 H 1.48499 * 109.47138 * 210.00362 * 12 10 8 15 15 H 1.48506 * 109.47011 * 330.00045 * 12 10 8 16 16 C 1.33495 * 121.39527 * 0.24879 * 7 6 5 17 17 C 1.37637 * 120.63697 * 359.45472 * 16 7 6 18 18 H 1.08994 * 109.46813 * 59.99486 * 1 2 3 19 19 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46471 * 299.99557 * 1 2 3 21 21 H 1.09006 * 109.46946 * 240.00257 * 2 1 3 22 22 H 1.09000 * 109.47225 * 120.00584 * 2 1 3 23 23 H 1.09004 * 109.47099 * 60.00827 * 3 2 1 24 24 H 1.09000 * 109.47560 * 300.00378 * 3 2 1 25 25 H 1.07994 * 120.34023 * 0.04055 * 5 4 3 26 26 H 1.07996 * 119.68091 * 179.97438 * 6 5 4 27 27 H 0.96999 * 119.99761 * 180.02562 * 11 10 8 28 28 H 1.07997 * 119.67984 * 179.72089 * 16 7 6 29 29 H 1.07996 * 120.34243 * 180.27271 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2554 1.4427 -1.1972 6 6 5.6314 1.4421 -1.1657 7 7 6.2852 1.4408 -0.0018 8 6 7.6308 1.4398 -0.0024 9 1 8.1701 0.9690 -0.8111 10 6 8.3317 2.0490 1.0451 11 7 7.7243 2.9016 1.8297 12 14 10.1341 1.6444 1.3227 13 1 10.9783 2.5841 0.5420 14 1 10.4539 1.7745 2.7669 15 1 10.4029 0.2527 0.8796 16 6 5.6324 1.4351 1.1626 17 6 4.2564 1.4416 1.1953 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8901 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6768 1.9563 0.8901 24 1 1.6767 1.9564 -0.8899 25 1 3.7313 1.4435 -2.1414 26 1 6.1875 1.4419 -2.0915 27 1 8.2101 3.3240 2.5553 28 1 6.1893 1.4296 2.0879 29 1 3.7332 1.4414 2.1400 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306436098.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = 83.337994 kcal Electronic energy + Delta-G solvation = -11571.095285 eV Core-core repulsion = 9575.638392 eV Total energy + Delta-G solvation = -1995.456893 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.72214 -37.88962 -35.63604 -33.88694 -32.45251 -29.56840 -27.11271 -25.18940 -23.90617 -22.00304 -21.35817 -18.47428 -17.76507 -16.88995 -16.84091 -16.07129 -15.68541 -15.54558 -14.88588 -14.32982 -14.14222 -13.62799 -13.50781 -13.18403 -13.00997 -12.47547 -12.30048 -12.21915 -12.02496 -11.57516 -11.49583 -10.84433 -10.40365 -9.47491 -7.37588 -0.33161 0.04613 1.21043 1.31975 1.50468 1.83151 2.04627 2.22912 2.57378 3.65729 3.77991 3.91881 3.93799 4.17438 4.23312 4.25301 4.48654 4.52897 4.69779 4.82161 4.90826 4.99037 5.01758 5.09341 5.17388 5.20944 5.33394 5.47690 5.47937 5.74770 6.17726 6.27447 7.48547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.075 4.075 4 C -0.089 4.089 5 C -0.093 4.093 6 C -0.014 4.014 7 N -0.144 5.144 8 C -0.351 4.351 9 H 0.166 0.834 10 C 0.040 3.960 11 N -0.789 5.789 12 Si 1.001 2.999 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.245 1.245 16 C 0.017 3.983 17 C -0.100 4.100 18 H 0.059 0.941 19 H 0.054 0.946 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.179 0.821 26 H 0.195 0.805 27 H 0.318 0.682 28 H 0.168 0.832 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 -2.447 -2.819 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.112 4.112 4 C -0.097 4.097 5 C -0.111 4.111 6 C -0.151 4.151 7 N 0.209 4.791 8 C -0.485 4.485 9 H 0.183 0.817 10 C -0.183 4.183 11 N -0.413 5.413 12 Si 0.821 3.179 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.168 1.168 16 C -0.121 4.121 17 C -0.119 4.119 18 H 0.078 0.922 19 H 0.073 0.927 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.196 0.804 26 H 0.212 0.788 27 H 0.131 0.869 28 H 0.185 0.815 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.648 -2.267 -2.618 5.796 hybrid contribution 0.834 0.197 0.462 0.973 sum -3.815 -2.070 -2.156 4.846 Atomic orbital electron populations 1.21800 0.95293 1.01949 1.02250 1.21500 0.96016 0.95548 1.02393 1.20636 0.88220 0.97942 1.04442 1.20661 0.97661 0.98884 0.92454 1.21720 0.91809 0.97044 1.00546 1.23015 0.94835 1.06546 0.90753 1.38419 1.08559 1.26569 1.05520 1.21390 0.79375 1.35552 1.12145 0.81687 1.26748 1.06746 0.91493 0.93290 1.69510 1.42656 1.15491 1.13621 0.84694 0.73420 0.80806 0.79005 1.18878 1.19667 1.16820 1.22604 0.94173 1.03929 0.91409 1.21638 0.91639 0.97876 1.00710 0.92190 0.92736 0.92531 0.91622 0.92183 0.90061 0.89341 0.80366 0.78777 0.86945 0.81506 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.86 9.91 71.98 0.71 1.57 15 2 C -0.12 0.69 5.92 30.60 0.18 0.87 15 3 C -0.08 0.50 5.39 29.85 0.16 0.66 15 4 C -0.09 0.33 5.19 -19.47 -0.10 0.23 15 5 C -0.09 0.48 9.80 22.32 0.22 0.69 15 6 C -0.01 0.03 10.22 84.30 0.86 0.89 15 7 N -0.14 -0.54 2.58 -352.26 -0.91 -1.45 15 8 C -0.35 -2.03 9.28 84.70 0.79 -1.25 15 9 H 0.17 0.26 7.91 -2.91 -0.02 0.23 15 10 C 0.04 0.32 4.94 85.27 0.42 0.74 15 11 N -0.79 -8.62 11.24 21.83 0.25 -8.37 15 12 Si 1.00 4.56 29.59 68.60 2.03 6.60 15 13 H -0.26 -1.67 7.11 99.48 0.71 -0.97 15 14 H -0.27 -1.79 7.11 99.48 0.71 -1.08 15 15 H -0.25 -1.00 7.11 99.48 0.71 -0.30 15 16 C 0.02 0.06 8.99 84.30 0.76 0.82 15 17 C -0.10 0.11 9.80 22.32 0.22 0.33 15 18 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 15 19 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 15 20 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 15 21 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 15 22 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 15 23 H 0.08 -0.55 8.10 -2.39 -0.02 -0.57 15 24 H 0.09 -0.73 8.10 -2.39 -0.02 -0.75 15 25 H 0.18 -1.98 8.06 -2.91 -0.02 -2.01 15 26 H 0.20 -1.44 8.01 -2.91 -0.02 -1.46 15 27 H 0.32 2.97 8.30 -92.71 -0.77 2.20 15 28 H 0.17 1.00 6.18 -2.91 -0.02 0.98 15 29 H 0.16 -0.84 8.06 -2.91 -0.02 -0.86 15 Total: 0.00 -10.62 247.61 6.69 -3.93 By element: Atomic # 1 Polarization: -7.37 SS G_CDS: 1.10 Total: -6.26 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.22 Total: 5.56 kcal Atomic # 7 Polarization: -9.16 SS G_CDS: -0.66 Total: -9.82 kcal Atomic # 14 Polarization: 4.56 SS G_CDS: 2.03 Total: 6.60 kcal Total: -10.62 6.69 -3.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306436098.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.271 kcal (2) G-P(sol) polarization free energy of solvation -10.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds