Wall clock time and date at job start Mon Mar 30 2020 01:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40611 * 120.15840 * 2 1 4 4 C 1.41406 * 120.20929 * 359.69814 * 3 2 1 5 5 H 1.08004 * 119.99651 * 333.92661 * 4 3 2 6 6 C 1.39934 * 119.99923 * 153.92846 * 4 3 2 7 7 N 1.30826 * 119.99549 * 343.76835 * 6 4 3 8 8 Si 1.86798 * 120.00094 * 163.77029 * 6 4 3 9 9 H 1.48496 * 109.47149 * 89.99716 * 8 6 4 10 10 H 1.48499 * 109.47158 * 210.00158 * 8 6 4 11 11 H 1.48503 * 109.46975 * 329.99621 * 8 6 4 12 12 C 1.40748 * 119.57999 * 179.97438 * 3 2 1 13 13 C 1.37691 * 119.89855 * 359.97438 * 12 3 2 14 14 C 1.38477 * 120.31915 * 359.97438 * 13 12 3 15 15 C 1.38270 * 120.16290 * 179.97438 * 2 1 3 16 16 N 1.39677 * 119.95328 * 0.02562 * 15 2 1 17 17 N 1.36598 * 120.00024 * 179.97438 * 16 15 2 18 18 H 1.08997 * 109.46712 * 90.00297 * 1 2 3 19 19 H 1.09002 * 109.46924 * 210.00202 * 1 2 3 20 20 H 1.09001 * 109.47396 * 330.00502 * 1 2 3 21 21 H 0.97001 * 119.99629 * 180.02562 * 7 6 4 22 22 H 1.07999 * 120.05285 * 179.97438 * 12 3 2 23 23 H 1.07994 * 119.84180 * 180.02562 * 13 12 3 24 24 H 1.08007 * 119.78687 * 180.02562 * 14 13 12 25 25 H 0.96995 * 120.00128 * 0.02562 * 16 15 2 26 26 H 1.00901 * 111.00294 * 56.05172 * 17 16 15 27 27 H 1.00909 * 111.00111 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2158 0.0000 4 6 1.5143 2.4449 -0.0064 5 1 0.5189 2.4977 -0.4222 6 6 2.1121 3.5927 0.5259 7 7 3.1587 3.4844 1.3034 8 14 1.4159 5.2794 0.1263 9 1 0.3924 5.6448 1.1382 10 1 2.5099 6.2833 0.1437 11 1 0.7918 5.2508 -1.2210 12 6 3.6208 1.2016 0.0005 13 6 4.2951 0.0010 0.0016 14 6 3.5952 -1.1938 0.0027 15 6 2.2018 -1.1955 0.0005 16 7 1.5058 -2.4065 0.0005 17 7 2.1912 -3.5881 0.0005 18 1 -0.3632 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8900 0.5137 21 1 3.5729 4.2800 1.6727 22 1 4.1711 2.1309 0.0001 23 1 5.3750 -0.0088 0.0024 24 1 4.1328 -2.1306 0.0039 25 1 0.5359 -2.4085 -0.0002 26 1 2.8277 -3.6370 0.7819 27 1 1.5578 -4.3736 0.0010 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306609741.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:20 Heat of formation + Delta-G solvation = 20.155964 kcal Electronic energy + Delta-G solvation = -11647.393928 eV Core-core repulsion = 9597.427085 eV Total energy + Delta-G solvation = -2049.966843 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96582 -37.29997 -35.12957 -33.31338 -31.35760 -28.39197 -27.30171 -26.36837 -22.20914 -21.59854 -19.23000 -18.36180 -17.47169 -16.67121 -15.83203 -15.57277 -15.00750 -14.63257 -14.20755 -13.73926 -13.19012 -13.08527 -12.93985 -12.75037 -12.44503 -12.16648 -11.75752 -11.46321 -11.07299 -10.92568 -9.69152 -9.12535 -8.55446 -7.65106 -6.26044 1.07331 1.34116 1.41587 1.54048 1.61998 2.25014 2.46938 2.85242 3.84297 4.34116 4.60416 4.61591 4.82073 4.99166 5.05385 5.21325 5.31474 5.41129 5.50400 5.67075 5.97110 6.10934 6.20656 6.27237 6.41359 6.73578 6.97994 7.07442 7.26466 7.64305 8.42768 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.060068 B = 0.011187 C = 0.009696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.028907 B = 2502.371687 C = 2887.129240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.284 4.284 3 C 0.113 3.887 4 C -0.492 4.492 5 H 0.079 0.921 6 C 0.034 3.966 7 N -0.828 5.828 8 Si 0.979 3.021 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.259 1.259 12 C -0.230 4.230 13 C -0.085 4.085 14 C -0.293 4.293 15 C 0.234 3.766 16 N -0.607 5.607 17 N -0.605 5.605 18 H 0.047 0.953 19 H 0.055 0.945 20 H 0.049 0.951 21 H 0.285 0.715 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.112 0.888 25 H 0.402 0.598 26 H 0.331 0.669 27 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 -5.365 -0.446 6.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.291 4.291 3 C 0.110 3.890 4 C -0.521 4.521 5 H 0.097 0.903 6 C -0.180 4.180 7 N -0.455 5.455 8 Si 0.800 3.200 9 H -0.187 1.187 10 H -0.194 1.194 11 H -0.183 1.183 12 C -0.250 4.250 13 C -0.104 4.104 14 C -0.316 4.316 15 C 0.133 3.867 16 N -0.335 5.335 17 N -0.232 5.232 18 H 0.065 0.935 19 H 0.074 0.926 20 H 0.068 0.932 21 H 0.095 0.905 22 H 0.112 0.888 23 H 0.122 0.878 24 H 0.130 0.870 25 H 0.242 0.758 26 H 0.145 0.855 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.036 -5.159 -0.994 6.068 hybrid contribution -0.682 0.489 0.996 1.303 sum -3.718 -4.670 0.002 5.969 Atomic orbital electron populations 1.20149 0.91633 1.00609 0.99982 1.19544 0.95840 0.91276 1.22415 1.17582 0.92051 0.92307 0.87022 1.19768 1.02553 0.93395 1.36413 0.90286 1.26755 0.94351 1.04866 0.92019 1.69928 1.19712 1.32813 1.23028 0.85259 0.78746 0.76124 0.79879 1.18683 1.19436 1.18268 1.21121 0.94925 0.96365 1.12634 1.20708 0.98152 0.92762 0.98728 1.20091 0.92121 0.97062 1.22325 1.17204 0.91180 0.83858 0.94462 1.43169 1.05770 0.99120 1.85469 1.60062 1.19125 0.94739 1.49227 0.93471 0.92642 0.93199 0.90501 0.88794 0.87758 0.86995 0.75836 0.85524 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.72 8.95 71.24 0.64 -2.08 15 2 C -0.28 -13.97 5.95 -19.28 -0.11 -14.08 15 3 C 0.11 6.31 5.56 -21.31 -0.12 6.19 15 4 C -0.49 -26.84 8.11 23.46 0.19 -26.65 15 5 H 0.08 4.12 6.90 -2.91 -0.02 4.10 15 6 C 0.03 1.77 5.16 85.25 0.44 2.21 15 7 N -0.83 -44.81 10.98 21.82 0.24 -44.57 15 8 Si 0.98 39.03 29.59 68.60 2.03 41.06 15 9 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 10 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 11 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 12 C -0.23 -12.77 8.68 22.75 0.20 -12.58 15 13 C -0.08 -4.20 10.02 22.20 0.22 -3.98 15 14 C -0.29 -13.56 9.37 22.59 0.21 -13.35 15 15 C 0.23 10.59 6.67 38.16 0.25 10.84 15 16 N -0.61 -21.15 6.55 -51.49 -0.34 -21.49 15 17 N -0.61 -17.00 9.59 37.02 0.36 -16.64 15 18 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 19 H 0.05 1.88 6.54 -2.39 -0.02 1.86 15 20 H 0.05 2.13 6.79 -2.39 -0.02 2.11 15 21 H 0.28 13.95 8.30 -92.71 -0.77 13.18 15 22 H 0.09 5.47 6.22 -2.91 -0.02 5.45 15 23 H 0.10 4.62 8.06 -2.91 -0.02 4.60 15 24 H 0.11 4.65 7.01 -2.91 -0.02 4.63 15 25 H 0.40 12.24 6.80 -215.50 -1.47 10.77 15 26 H 0.33 8.94 8.42 -210.56 -1.77 7.17 15 27 H 0.36 7.20 9.21 -210.55 -1.94 5.27 15 Total: -1.00 -62.76 228.90 0.25 -62.51 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -3.96 Total: 32.61 kcal Atomic # 6 Polarization: -55.40 SS G_CDS: 1.92 Total: -53.48 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: 0.26 Total: -82.70 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -62.76 0.25 -62.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306609741.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.669 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds