Wall clock time and date at job start Mon Mar 30 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38212 * 119.98732 * 2 1 4 4 C 1.38853 * 120.62771 * 179.97438 * 3 2 1 5 5 C 1.36489 * 120.59240 * 0.23515 * 4 3 2 6 6 C 1.40696 * 119.95128 * 359.49501 * 5 4 3 7 7 C 1.41043 * 120.30414 * 180.22789 * 6 5 4 8 8 H 1.07999 * 120.00296 * 221.68451 * 7 6 5 9 9 C 1.39933 * 119.99949 * 41.69334 * 7 6 5 10 10 N 1.30872 * 120.00064 * 8.24523 * 9 7 6 11 11 Si 1.86806 * 119.99758 * 188.24994 * 9 7 6 12 12 H 1.48498 * 109.47373 * 59.99649 * 11 9 7 13 13 H 1.48500 * 109.46747 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47125 * 299.99221 * 11 9 7 15 15 C 1.38705 * 119.98612 * 179.97438 * 2 1 3 16 16 N 1.38740 * 120.29188 * 0.02562 * 15 2 1 17 17 N 1.45403 * 110.99769 * 144.47200 * 16 15 2 18 18 H 1.08998 * 109.47033 * 94.09643 * 1 2 3 19 19 H 1.08995 * 109.47154 * 214.09844 * 1 2 3 20 20 H 1.09003 * 109.47160 * 334.10469 * 1 2 3 21 21 H 1.08004 * 119.68451 * 359.97438 * 3 2 1 22 22 H 1.08000 * 119.70128 * 179.97438 * 4 3 2 23 23 H 1.08003 * 120.01829 * 179.73910 * 5 4 3 24 24 H 0.97008 * 120.00054 * 180.02562 * 10 9 7 25 25 H 1.00903 * 111.00037 * 20.51952 * 16 15 2 26 26 H 1.00898 * 110.99851 * 174.08791 * 17 16 15 27 27 H 1.00900 * 110.99532 * 298.03925 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5863 1.2126 0.0005 5 6 4.2940 0.0456 -0.0038 6 6 3.6159 -1.1872 0.0020 7 6 4.3398 -2.3977 0.0024 8 1 4.0152 -3.2213 -0.6162 9 6 5.4785 -2.5316 0.8046 10 7 5.7809 -1.5998 1.6724 11 14 6.5671 -4.0404 0.6367 12 1 7.0935 -4.1192 -0.7496 13 1 7.7004 -3.9417 1.5912 14 1 5.7730 -5.2593 0.9348 15 6 2.2003 -1.2014 0.0005 16 7 1.5124 -2.4063 0.0005 17 7 2.2138 -3.4066 -0.7878 18 1 -0.3633 -0.0734 -1.0250 19 1 -0.3633 -0.8509 0.5761 20 1 -0.3634 0.9245 0.4488 21 1 1.6525 2.1293 -0.0004 22 1 4.1109 2.1567 0.0001 23 1 5.3738 0.0685 -0.0076 24 1 6.5705 -1.6924 2.2283 25 1 0.5671 -2.2830 -0.3301 26 1 1.7661 -4.3075 -0.7099 27 1 2.2860 -3.1210 -1.7528 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306655335.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:23 Heat of formation + Delta-G solvation = 36.770432 kcal Electronic energy + Delta-G solvation = -11858.384610 eV Core-core repulsion = 9809.138224 eV Total energy + Delta-G solvation = -2049.246386 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05017 -36.27513 -35.47449 -32.96824 -31.03879 -28.88871 -27.06926 -26.01543 -22.16882 -21.56853 -18.64803 -17.75036 -17.07023 -16.68541 -16.13164 -15.51385 -14.68650 -14.47886 -14.21393 -13.85303 -13.35803 -13.10436 -12.73743 -12.65294 -12.33527 -12.21444 -11.66562 -11.29085 -10.88707 -10.78299 -9.38566 -8.79720 -8.43914 -8.25074 -5.95604 0.99829 1.07881 1.45651 1.56157 1.59789 2.38929 2.86656 3.17877 3.81106 4.24833 4.38743 4.47324 4.73620 4.78017 4.88418 5.12683 5.18894 5.52408 5.64412 5.67175 5.91419 6.06154 6.26125 6.42437 6.54059 6.65176 7.05503 7.16079 7.24696 7.33069 8.69714 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043358 B = 0.014649 C = 0.011535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.626358 B = 1910.916659 C = 2426.747307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.117 4.117 3 C -0.215 4.215 4 C -0.130 4.130 5 C -0.174 4.174 6 C 0.086 3.914 7 C -0.463 4.463 8 H 0.136 0.864 9 C 0.011 3.989 10 N -0.869 5.869 11 Si 0.981 3.019 12 H -0.262 1.262 13 H -0.287 1.287 14 H -0.263 1.263 15 C -0.013 4.013 16 N -0.444 5.444 17 N -0.647 5.647 18 H 0.074 0.926 19 H 0.064 0.936 20 H 0.073 0.927 21 H 0.119 0.881 22 H 0.104 0.896 23 H 0.080 0.920 24 H 0.271 0.729 25 H 0.317 0.683 26 H 0.350 0.650 27 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.624 -1.510 -4.803 8.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.235 4.235 4 C -0.149 4.149 5 C -0.194 4.194 6 C 0.082 3.918 7 C -0.495 4.495 8 H 0.153 0.847 9 C -0.197 4.197 10 N -0.500 5.500 11 Si 0.804 3.196 12 H -0.186 1.186 13 H -0.213 1.213 14 H -0.188 1.188 15 C -0.112 4.112 16 N -0.160 5.160 17 N -0.270 5.270 18 H 0.092 0.908 19 H 0.083 0.917 20 H 0.092 0.908 21 H 0.137 0.863 22 H 0.122 0.878 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.139 0.861 26 H 0.164 0.836 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.648 -1.638 -3.564 6.876 hybrid contribution -0.154 -0.094 -0.979 0.995 sum -5.801 -1.732 -4.543 7.569 Atomic orbital electron populations 1.20624 0.90014 1.02866 1.02106 1.19853 0.96413 0.92126 1.03758 1.20490 0.93376 0.96677 1.12911 1.20664 0.94925 0.96981 1.02360 1.20837 0.98015 0.93111 1.07453 1.17697 0.90123 0.94018 0.89993 1.20859 1.05633 1.00415 1.22567 0.84686 1.26873 0.98442 1.00149 0.94208 1.69966 1.25058 1.35765 1.19181 0.85279 0.77116 0.78734 0.78457 1.18635 1.21260 1.18792 1.19048 0.92867 0.87973 1.11341 1.60737 1.02292 1.07032 1.45987 1.63089 1.49603 1.01647 1.12648 0.90785 0.91738 0.90765 0.86315 0.87759 0.90162 0.91920 0.86141 0.83560 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.05 9.12 71.24 0.65 -2.41 15 2 C -0.12 -4.97 5.89 -19.76 -0.12 -5.08 15 3 C -0.21 -9.32 9.67 22.41 0.22 -9.10 15 4 C -0.13 -6.25 9.96 22.01 0.22 -6.03 15 5 C -0.17 -9.52 8.57 22.46 0.19 -9.33 15 6 C 0.09 4.72 5.32 -21.17 -0.11 4.60 15 7 C -0.46 -25.19 7.87 23.37 0.18 -25.01 15 8 H 0.14 6.81 4.99 -2.94 -0.01 6.80 15 9 C 0.01 0.61 5.25 85.25 0.45 1.06 15 10 N -0.87 -50.25 11.66 21.83 0.25 -49.99 15 11 Si 0.98 42.00 29.57 68.60 2.03 44.02 15 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 13 H -0.29 -12.13 7.11 99.48 0.71 -11.42 15 14 H -0.26 -10.91 7.11 99.48 0.71 -10.21 15 15 C -0.01 -0.61 6.30 38.98 0.25 -0.37 15 16 N -0.44 -18.01 7.50 -50.40 -0.38 -18.39 15 17 N -0.65 -23.78 6.23 37.02 0.23 -23.55 15 18 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 19 H 0.06 1.89 7.04 -2.39 -0.02 1.87 15 20 H 0.07 2.04 8.06 -2.39 -0.02 2.02 15 21 H 0.12 4.35 8.06 -2.91 -0.02 4.33 15 22 H 0.10 4.46 8.06 -2.91 -0.02 4.44 15 23 H 0.08 4.67 7.15 -2.91 -0.02 4.65 15 24 H 0.27 14.66 8.30 -92.70 -0.77 13.89 15 25 H 0.32 10.49 6.89 -204.84 -1.41 9.08 15 26 H 0.35 10.30 9.24 -204.85 -1.89 8.41 15 27 H 0.32 10.68 9.13 -204.85 -1.87 8.81 15 Total: -1.00 -65.06 229.29 0.10 -64.95 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -3.96 Total: 34.61 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 1.93 Total: -51.66 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: 0.11 Total: -91.93 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -65.06 0.10 -64.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306655335.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.724 kcal (2) G-P(sol) polarization free energy of solvation -65.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds