Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47187 * 2 1 4 4 C 1.38365 * 119.99912 * 179.97438 * 3 2 1 5 5 C 1.39706 * 119.43392 * 359.97438 * 4 3 2 6 6 C 1.36559 * 119.49449 * 179.97438 * 5 4 3 7 7 C 1.41322 * 118.41095 * 0.02562 * 6 5 4 8 8 C 1.41206 * 120.56861 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99829 * 203.64639 * 8 7 6 10 10 C 1.39868 * 119.99978 * 23.66014 * 8 7 6 11 11 N 1.30900 * 119.99856 * 17.63190 * 10 8 7 12 12 Si 1.86799 * 119.99799 * 197.63791 * 10 8 7 13 13 H 1.48506 * 109.46999 * 89.99792 * 12 10 8 14 14 H 1.48493 * 109.47096 * 209.99573 * 12 10 8 15 15 H 1.48500 * 109.47361 * 329.99628 * 12 10 8 16 16 C 1.40750 * 118.85709 * 359.97438 * 7 6 5 17 17 N 1.31479 * 120.36935 * 359.72399 * 16 7 6 18 18 H 1.09004 * 109.47255 * 300.00140 * 1 2 3 19 19 H 1.08999 * 109.47205 * 60.00290 * 1 2 3 20 20 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46716 * 239.99637 * 2 1 3 22 22 H 1.09006 * 109.46783 * 120.00227 * 2 1 3 23 23 H 0.97001 * 119.99883 * 0.02562 * 3 2 1 24 24 H 1.07999 * 120.24781 * 359.97438 * 5 4 3 25 25 H 1.08006 * 120.79466 * 180.02562 * 6 5 4 26 26 H 0.97006 * 119.99373 * 180.02562 * 11 10 8 27 27 H 1.07999 * 119.81280 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3787 1.6340 0.0005 5 6 4.2760 0.5632 0.0016 6 6 5.6189 0.8112 0.0016 7 6 6.0543 2.1557 0.0011 8 6 7.4322 2.4643 0.0016 9 1 7.7717 3.4186 0.3763 10 6 8.3574 1.5342 -0.4835 11 7 7.9555 0.5459 -1.2419 12 14 10.1663 1.7025 -0.0490 13 1 10.4460 0.9553 1.2036 14 1 10.9936 1.1488 -1.1508 15 1 10.4973 3.1369 0.1459 16 6 5.0908 3.1818 0.0000 17 7 3.8088 2.8898 -0.0060 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.3880 2.1185 0.0004 24 1 3.9103 -0.4530 0.0024 25 1 6.3312 -0.0007 0.0020 26 1 8.5972 -0.0994 -1.5780 27 1 5.4064 4.2146 0.0000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306954636.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = 5.011900 kcal Electronic energy + Delta-G solvation = -11351.774631 eV Core-core repulsion = 9301.151092 eV Total energy + Delta-G solvation = -2050.623539 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39069 -37.12686 -35.50507 -32.56328 -32.03103 -29.98477 -26.55199 -24.42129 -23.24131 -22.18023 -19.19670 -18.17123 -17.16203 -16.75157 -15.86595 -15.52192 -15.19569 -14.67791 -14.33437 -13.77256 -13.48110 -13.13243 -12.91006 -12.75446 -12.53177 -12.40532 -12.20293 -11.62926 -11.20678 -10.44562 -10.17508 -9.94923 -8.68530 -8.41807 -6.13662 0.87736 1.10971 1.41911 1.54943 1.57417 2.24971 2.71310 2.81124 3.78256 4.19161 4.26277 4.32206 4.56855 4.65956 4.76642 4.90566 5.03808 5.14282 5.26421 5.30058 5.40443 5.58122 5.87518 5.97671 6.48412 6.63708 6.83073 6.91935 7.15280 7.83638 8.39103 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.082857 B = 0.008551 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.850896 B = 3273.744919 C = 3535.457273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.128 3.872 3 N -0.739 5.739 4 C 0.280 3.720 5 C -0.208 4.208 6 C -0.110 4.110 7 C -0.002 4.002 8 C -0.492 4.492 9 H 0.078 0.922 10 C 0.033 3.967 11 N -0.837 5.837 12 Si 0.985 3.015 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.259 1.259 16 C -0.004 4.004 17 N -0.539 5.539 18 H 0.063 0.937 19 H 0.062 0.938 20 H 0.090 0.910 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.395 0.605 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.287 0.713 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -3.358 1.840 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.004 3.996 3 N -0.379 5.379 4 C 0.045 3.955 5 C -0.232 4.232 6 C -0.136 4.136 7 C -0.007 4.007 8 C -0.523 4.523 9 H 0.097 0.903 10 C -0.180 4.180 11 N -0.464 5.464 12 Si 0.806 3.194 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.182 1.182 16 C -0.161 4.161 17 N -0.255 5.255 18 H 0.082 0.918 19 H 0.081 0.919 20 H 0.109 0.891 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.230 0.770 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.097 0.903 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.612 -3.083 1.686 7.488 hybrid contribution 1.274 -0.341 -0.032 1.319 sum -5.338 -3.424 1.654 6.554 Atomic orbital electron populations 1.21892 0.92218 1.03958 1.02662 1.21262 0.95971 0.82180 1.00189 1.43903 1.01378 1.07561 1.85073 1.18189 0.86230 0.88835 1.02243 1.21047 0.93673 0.98282 1.10240 1.21346 0.94326 0.97361 1.00611 1.18663 0.95087 0.92493 0.94447 1.19585 0.91240 1.02986 1.38511 0.90339 1.26710 1.05948 0.93581 0.91756 1.69876 1.38910 1.13224 1.24434 0.85164 0.75685 0.79802 0.78789 1.18807 1.19481 1.18229 1.22386 0.86917 0.98381 1.08384 1.66618 1.18970 1.20687 1.19221 0.91753 0.91937 0.89100 0.93614 0.93236 0.77020 0.85979 0.86506 0.90263 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 10.03 71.98 0.72 -2.17 15 2 C 0.13 3.61 5.59 86.38 0.48 4.09 15 3 N -0.74 -26.97 5.70 -344.87 -1.97 -28.94 15 4 C 0.28 13.10 7.64 133.31 1.02 14.12 15 5 C -0.21 -10.00 9.24 22.23 0.21 -9.80 15 6 C -0.11 -5.89 8.75 22.64 0.20 -5.69 15 7 C 0.00 -0.09 5.59 -21.18 -0.12 -0.21 15 8 C -0.49 -26.90 9.07 23.39 0.21 -26.69 15 9 H 0.08 4.11 7.90 -2.91 -0.02 4.08 15 10 C 0.03 1.69 5.17 85.23 0.44 2.13 15 11 N -0.84 -44.16 10.92 21.82 0.24 -43.92 15 12 Si 0.98 38.55 29.59 68.60 2.03 40.58 15 13 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 14 H -0.27 -10.07 7.11 99.48 0.71 -9.37 15 15 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 16 C 0.00 -0.19 10.97 85.36 0.94 0.74 15 17 N -0.54 -27.35 10.37 -191.21 -1.98 -29.34 15 18 H 0.06 1.18 8.14 -2.38 -0.02 1.16 15 19 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.05 1.33 7.91 -2.39 -0.02 1.31 15 22 H 0.05 1.40 7.90 -2.38 -0.02 1.38 15 23 H 0.40 13.29 8.59 -92.71 -0.80 12.49 15 24 H 0.12 5.10 6.64 -2.91 -0.02 5.08 15 25 H 0.12 6.43 6.19 -2.91 -0.02 6.41 15 26 H 0.29 13.67 8.30 -92.70 -0.77 12.90 15 27 H 0.14 6.68 8.06 -2.91 -0.02 6.65 15 Total: -1.00 -61.73 235.87 2.79 -58.94 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.38 Total: 26.15 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.10 Total: -23.47 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.71 Total: -102.20 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -61.73 2.79 -58.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306954636.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.952 kcal (2) G-P(sol) polarization free energy of solvation -61.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds