Wall clock time and date at job start Mon Mar 30 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37693 * 120.04974 * 2 1 4 4 C 1.38476 * 120.32109 * 180.27674 * 3 2 1 5 5 C 1.39338 * 120.42452 * 359.44620 * 4 3 2 6 6 N 1.39683 * 119.95045 * 180.25262 * 5 4 3 7 7 N 1.36594 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.38281 * 120.09597 * 0.26779 * 5 4 3 9 9 C 1.40598 * 119.67462 * 0.02562 * 8 5 4 10 10 C 1.41405 * 120.20536 * 180.02562 * 9 8 5 11 11 H 1.07997 * 120.00186 * 153.72941 * 10 9 8 12 12 C 1.39931 * 120.00106 * 333.72351 * 10 9 8 13 13 N 1.30832 * 119.99912 * 343.95638 * 12 10 9 14 14 Si 1.86800 * 120.00103 * 163.95057 * 12 10 9 15 15 H 1.48498 * 109.47060 * 94.96595 * 14 12 10 16 16 H 1.48498 * 109.47035 * 214.96451 * 14 12 10 17 17 H 1.48502 * 109.47068 * 334.96484 * 14 12 10 18 18 H 1.09003 * 109.47295 * 270.27908 * 1 2 3 19 19 H 1.09004 * 109.47036 * 30.27731 * 1 2 3 20 20 H 1.08998 * 109.46934 * 150.27610 * 1 2 3 21 21 H 1.08001 * 119.84077 * 0.02562 * 3 2 1 22 22 H 1.07996 * 119.78985 * 179.71187 * 4 3 2 23 23 H 0.97001 * 119.99875 * 179.97438 * 6 5 4 24 24 H 1.00908 * 110.99851 * 56.04428 * 7 6 5 25 25 H 1.00898 * 111.00324 * 179.97438 * 7 6 5 26 26 H 1.08002 * 120.15985 * 179.97438 * 8 5 4 27 27 H 0.97004 * 120.00038 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1919 0.0000 4 6 3.5813 1.1984 -0.0058 5 6 4.2926 0.0003 0.0000 6 7 5.6893 0.0185 -0.0006 7 7 6.3569 1.2102 -0.0073 8 6 3.6178 -1.2067 0.0059 9 6 2.2119 -1.2182 0.0056 10 6 1.5105 -2.4460 0.0122 11 1 0.5143 -2.4966 0.4261 12 6 2.1071 -3.5955 -0.5178 13 7 3.1575 -3.4903 -1.2907 14 14 1.4040 -5.2801 -0.1216 15 1 0.4730 -5.6944 -1.2017 16 1 2.5098 -6.2657 -0.0162 17 1 0.6703 -5.2195 1.1681 18 1 -0.3634 0.0050 1.0277 19 1 -0.3633 0.8875 -0.5182 20 1 -0.3633 -0.8924 -0.5095 21 1 1.6547 2.1261 0.0004 22 1 4.1133 2.1382 -0.0104 23 1 6.1852 -0.8151 0.0038 24 1 6.0748 1.7871 0.7711 25 1 7.3554 1.0654 -0.0064 26 1 4.1682 -2.1360 0.0099 27 1 3.5708 -4.2871 -1.6584 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307022893.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:41 Heat of formation + Delta-G solvation = 17.590511 kcal Electronic energy + Delta-G solvation = -11604.971701 eV Core-core repulsion = 9554.893612 eV Total energy + Delta-G solvation = -2050.078089 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81202 -37.42952 -35.28118 -32.80609 -31.33761 -29.20230 -27.06127 -25.64467 -22.91442 -21.21790 -19.10260 -18.57026 -17.31584 -16.68374 -15.61563 -15.54684 -15.10325 -14.40887 -14.24771 -13.94995 -13.32394 -13.05705 -12.75470 -12.67684 -12.55272 -12.09063 -11.66481 -11.40413 -11.14848 -10.93623 -9.61804 -9.17950 -8.55869 -7.61053 -6.25235 1.11837 1.32240 1.40924 1.53367 1.60700 2.25641 2.46844 2.86006 3.84882 4.35803 4.58357 4.81990 4.88334 5.02342 5.13185 5.23457 5.31935 5.39105 5.56718 5.65889 5.94933 6.15031 6.19279 6.30125 6.44456 6.69451 7.01069 7.11120 7.25975 7.64498 8.43916 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.037240 B = 0.013329 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.692117 B = 2100.173562 C = 2769.615627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.253 4.253 3 C -0.069 4.069 4 C -0.289 4.289 5 C 0.216 3.784 6 N -0.613 5.613 7 N -0.603 5.603 8 C -0.256 4.256 9 C 0.111 3.889 10 C -0.492 4.492 11 H 0.078 0.922 12 C 0.034 3.966 13 N -0.828 5.828 14 Si 0.977 3.023 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.259 1.259 18 H 0.048 0.952 19 H 0.057 0.943 20 H 0.046 0.954 21 H 0.116 0.884 22 H 0.112 0.888 23 H 0.398 0.602 24 H 0.331 0.669 25 H 0.362 0.638 26 H 0.099 0.901 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 2.285 2.982 4.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.256 4.256 3 C -0.087 4.087 4 C -0.312 4.312 5 C 0.115 3.885 6 N -0.339 5.339 7 N -0.229 5.229 8 C -0.281 4.281 9 C 0.108 3.892 10 C -0.522 4.522 11 H 0.096 0.904 12 C -0.179 4.179 13 N -0.454 5.454 14 Si 0.798 3.202 15 H -0.190 1.190 16 H -0.194 1.194 17 H -0.183 1.183 18 H 0.067 0.933 19 H 0.076 0.924 20 H 0.065 0.935 21 H 0.134 0.866 22 H 0.130 0.870 23 H 0.235 0.765 24 H 0.146 0.854 25 H 0.176 0.824 26 H 0.117 0.883 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.205 2.460 2.137 3.935 hybrid contribution 0.691 -1.338 0.901 1.755 sum 2.896 1.123 3.038 4.345 Atomic orbital electron populations 1.20292 0.91854 1.00726 1.00124 1.20094 0.96054 0.92974 1.16450 1.20560 0.93593 0.96485 0.98110 1.20149 0.93852 0.95414 1.21803 1.17618 0.81667 0.94223 0.94957 1.43134 1.02284 1.02654 1.85836 1.60038 1.09039 1.04480 1.49367 1.20595 0.94774 0.94569 1.18175 1.17554 0.91557 0.92772 0.87297 1.19767 1.02377 0.93473 1.36605 0.90383 1.26716 0.94494 1.04669 0.92069 1.69940 1.19803 1.32433 1.23245 0.85277 0.78751 0.76398 0.79754 1.18962 1.19426 1.18268 0.93288 0.92397 0.93535 0.86602 0.86979 0.76510 0.85429 0.82368 0.88264 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.10 9.40 71.24 0.67 -2.43 15 2 C -0.25 -12.66 5.94 -19.38 -0.12 -12.78 15 3 C -0.07 -3.16 9.67 22.20 0.21 -2.94 15 4 C -0.29 -13.25 9.37 22.59 0.21 -13.04 15 5 C 0.22 10.35 6.69 38.17 0.26 10.61 15 6 N -0.61 -23.68 6.65 -51.48 -0.34 -24.03 15 7 N -0.60 -18.34 9.59 37.02 0.36 -17.98 15 8 C -0.26 -13.83 8.52 22.86 0.19 -13.63 15 9 C 0.11 6.17 5.56 -21.31 -0.12 6.05 15 10 C -0.49 -26.89 8.11 23.46 0.19 -26.70 15 11 H 0.08 4.10 6.89 -2.91 -0.02 4.08 15 12 C 0.03 1.77 5.16 85.25 0.44 2.21 15 13 N -0.83 -44.34 10.97 21.82 0.24 -44.10 15 14 Si 0.98 39.00 29.59 68.60 2.03 41.03 15 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 16 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 18 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 19 H 0.06 2.12 8.09 -2.38 -0.02 2.10 15 20 H 0.05 2.04 6.78 -2.39 -0.02 2.03 15 21 H 0.12 4.52 8.06 -2.91 -0.02 4.50 15 22 H 0.11 4.60 7.01 -2.91 -0.02 4.58 15 23 H 0.40 14.32 8.84 -215.50 -1.90 12.42 15 24 H 0.33 9.34 8.43 -210.55 -1.77 7.56 15 25 H 0.36 8.13 9.21 -210.56 -1.94 6.19 15 26 H 0.10 5.57 6.22 -2.91 -0.02 5.55 15 27 H 0.28 13.75 8.30 -92.70 -0.77 12.98 15 Total: -1.00 -62.15 232.48 -0.18 -62.33 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -4.40 Total: 35.39 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 1.94 Total: -52.65 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: 0.25 Total: -86.11 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -62.15 -0.18 -62.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022893.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.923 kcal (2) G-P(sol) polarization free energy of solvation -62.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds