Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37689 * 119.83417 * 2 1 4 4 C 1.40755 * 119.88805 * 179.97438 * 3 2 1 5 5 C 1.41414 * 120.20111 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99354 * 204.47455 * 5 4 3 7 7 C 1.39925 * 120.00281 * 24.47473 * 5 4 3 8 8 N 1.30828 * 120.00028 * 17.86168 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 197.86766 * 7 5 4 10 10 H 1.48499 * 109.47482 * 89.99817 * 9 7 5 11 11 H 1.48499 * 109.47054 * 209.99561 * 9 7 5 12 12 H 1.48495 * 109.47336 * 329.99721 * 9 7 5 13 13 C 1.40598 * 119.58934 * 0.04976 * 4 3 2 14 14 C 1.38282 * 119.67384 * 359.97091 * 13 4 3 15 15 N 1.39683 * 119.95217 * 179.97438 * 14 13 4 16 16 N 1.36606 * 119.99841 * 0.02562 * 15 14 13 17 17 C 1.38475 * 119.83907 * 180.02562 * 2 1 3 18 18 H 1.08991 * 109.46931 * 269.97413 * 1 2 3 19 19 H 1.09001 * 109.47179 * 29.98139 * 1 2 3 20 20 H 1.09000 * 109.46682 * 149.97749 * 1 2 3 21 21 H 1.07996 * 120.05798 * 359.97438 * 3 2 1 22 22 H 0.97001 * 119.99964 * 179.97438 * 8 7 5 23 23 H 1.07998 * 120.16191 * 180.25853 * 13 4 3 24 24 H 0.96996 * 120.00371 * 180.02562 * 15 14 13 25 25 H 1.00905 * 110.99543 * 56.04640 * 16 15 14 26 26 H 1.00900 * 110.99760 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.78775 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1920 1.1944 0.0000 4 6 3.5996 1.1957 0.0005 5 6 4.3098 2.4186 0.0011 6 1 5.3172 2.4580 -0.3860 7 6 3.7073 3.5774 0.5031 8 7 2.6565 3.4856 1.2771 9 14 4.4032 5.2554 0.0681 10 1 3.7549 5.7542 -1.1713 11 1 4.1404 6.2038 1.1802 12 1 5.8677 5.1425 -0.1504 13 6 4.2950 -0.0262 0.0000 14 6 3.5893 -1.2155 -0.0004 15 7 4.2743 -2.4328 -0.0015 16 7 5.6403 -2.4479 -0.0015 17 6 2.1960 -1.2012 -0.0005 18 1 -0.3633 -0.0005 1.0276 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6503 2.1287 -0.0004 22 1 2.2391 4.2890 1.6254 23 1 5.3749 -0.0360 0.0047 24 1 3.7801 -3.2674 -0.0021 25 1 6.0076 -1.9265 0.7803 26 1 5.9914 -3.3939 -0.0019 27 1 1.6499 -2.1329 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307443170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = 35.075985 kcal Electronic energy + Delta-G solvation = -11508.420736 eV Core-core repulsion = 9459.100874 eV Total energy + Delta-G solvation = -2049.319862 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.01647 -35.72585 -33.57704 -31.10962 -29.83755 -26.32550 -25.44033 -24.89758 -20.77305 -19.37371 -17.52592 -16.51346 -15.55223 -14.95776 -14.30861 -13.92586 -13.23228 -12.83867 -12.58465 -11.87688 -11.63051 -11.34523 -11.25556 -11.03766 -10.64985 -10.40350 -9.90763 -9.73801 -9.26385 -9.04245 -7.97088 -7.22320 -6.65328 -5.99693 -4.25087 2.88810 3.13460 3.17643 3.24313 3.40638 3.91721 4.02731 4.73894 5.69340 5.82125 6.17201 6.22419 6.52462 6.59707 6.68454 6.99251 7.10776 7.18316 7.36359 7.45996 7.56448 7.98355 8.03137 8.23925 8.33968 8.60337 8.84905 9.02742 9.08293 9.21334 10.30246 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036899 B = 0.012425 C = 0.009569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.652976 B = 2252.997899 C = 2925.442880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.048 4.048 3 C -0.195 4.195 4 C 0.139 3.861 5 C -0.463 4.463 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.793 5.793 9 Si 0.906 3.094 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.263 1.263 13 C -0.278 4.278 14 C 0.230 3.770 15 N -0.618 5.618 16 N -0.600 5.600 17 C -0.299 4.299 18 H 0.053 0.947 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.116 0.884 22 H 0.278 0.722 23 H 0.097 0.903 24 H 0.387 0.613 25 H 0.326 0.674 26 H 0.337 0.663 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -4.595 -0.305 4.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.049 4.049 3 C -0.216 4.216 4 C 0.136 3.864 5 C -0.493 4.493 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.419 5.419 9 Si 0.730 3.270 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.187 1.187 13 C -0.302 4.302 14 C 0.132 3.868 15 N -0.346 5.346 16 N -0.222 5.222 17 C -0.323 4.323 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.134 0.866 22 H 0.089 0.911 23 H 0.115 0.885 24 H 0.223 0.777 25 H 0.140 0.860 26 H 0.149 0.851 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.219 -4.012 -0.852 4.107 hybrid contribution 0.166 -0.166 0.919 0.949 sum 0.385 -4.178 0.067 4.196 Atomic orbital electron populations 1.20619 0.93964 1.00499 1.00518 1.19183 0.93532 0.93246 0.98898 1.21066 0.94289 0.95809 1.10421 1.17383 0.91778 0.91533 0.85730 1.19559 1.01054 0.92356 1.36316 0.90584 1.25885 0.94239 1.01231 0.92634 1.69866 1.18385 1.31033 1.22590 0.86362 0.80449 0.81206 0.78947 1.19339 1.20472 1.18688 1.20423 0.97684 0.90695 1.21378 1.17317 0.90264 0.83790 0.95470 1.43181 0.98476 1.05911 1.87074 1.60192 0.94681 1.18438 1.48938 1.19542 0.91040 0.96070 1.25628 0.92817 0.92827 0.93504 0.86643 0.91124 0.88517 0.77711 0.85993 0.85144 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 10.00 36.01 0.36 -1.59 15 2 C -0.05 -1.15 5.87 -104.73 -0.61 -1.76 15 3 C -0.20 -5.27 8.34 -38.83 -0.32 -5.60 15 4 C 0.14 3.87 5.57 -106.85 -0.60 3.28 15 5 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 15 6 H 0.08 2.04 7.91 -52.49 -0.41 1.62 15 7 C 0.08 2.01 5.14 -17.35 -0.09 1.92 15 8 N -0.79 -21.06 10.96 55.55 0.61 -20.46 15 9 Si 0.91 19.20 29.60 -169.99 -5.03 14.17 15 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 12 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 13 C -0.28 -7.21 9.10 -38.68 -0.35 -7.57 15 14 C 0.23 5.41 6.69 -83.86 -0.56 4.85 15 15 N -0.62 -11.68 6.66 32.38 0.22 -11.46 15 16 N -0.60 -9.87 9.59 60.35 0.58 -9.29 15 17 C -0.30 -6.96 9.55 -39.09 -0.37 -7.33 15 18 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.05 1.01 8.08 -51.93 -0.42 0.59 15 20 H 0.05 0.81 8.08 -51.93 -0.42 0.39 15 21 H 0.12 3.21 6.15 -52.49 -0.32 2.88 15 22 H 0.28 6.71 8.30 -40.82 -0.34 6.37 15 23 H 0.10 2.44 7.02 -52.49 -0.37 2.08 15 24 H 0.39 6.22 8.84 -185.15 -1.64 4.59 15 25 H 0.33 5.35 8.42 -181.36 -1.53 3.82 15 26 H 0.34 4.13 9.21 -181.36 -1.67 2.46 15 27 H 0.08 1.73 8.06 -52.49 -0.42 1.30 15 LS Contribution 235.62 15.07 3.55 3.55 Total: -1.00 -29.70 235.62 -9.73 -39.43 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.76 Total: 10.98 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -2.89 Total: -26.92 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.40 Total: -41.21 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.70 -9.73 -39.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307443170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.504 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds